| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,322,749 – 6,322,833 |
| Length | 84 |
| Max. P | 0.960217 |
| Location | 6,322,749 – 6,322,833 |
|---|---|
| Length | 84 |
| Sequences | 7 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 89.30 |
| Shannon entropy | 0.19727 |
| G+C content | 0.46100 |
| Mean single sequence MFE | -28.59 |
| Consensus MFE | -23.57 |
| Energy contribution | -24.13 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6322749 84 - 22422827 UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCAGCAAUGUGAACAAUGCCAAUGGCCAAGGGCCACUCGA- .(((((........((((.......)))).........((((((((((((.((....)).)))...))))))))))))))....- ( -30.80, z-score = -3.59, R) >droSim1.chrX 4966694 84 - 17042790 UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCAGCAAUGUGAACAAUGCCAGUGGCCAAGGGCCACUCGA- .(((((........((((.......)))).........((((((((((((.((....)).)))...))))))))))))))....- ( -30.80, z-score = -3.22, R) >droSec1.super_4 5722951 84 + 6179234 UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCAGCAAUGUGAACAAUGCCAGUGGCCAAGGGCCACUCUA- .(((((........((((.......)))).........((((((((((((.((....)).)))...))))))))))))))....- ( -30.80, z-score = -3.17, R) >droYak2.chrX 2307900 84 - 21770863 UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCGGCAAUGUGAACAAUGCCAGUAGCCAAGGGCCACUCGA- .(((((........((((.......)))).........(((((((.((((.((....)).))))....))))))))))))....- ( -29.10, z-score = -2.90, R) >droEre2.scaffold_4690 15277839 84 - 18748788 UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCAGCAAUGUGAACAAUGCCAGUGGCCAAGGGCCACUCGA- .(((((........((((.......)))).........((((((((((((.((....)).)))...))))))))))))))....- ( -30.80, z-score = -3.22, R) >dp4.chrXL_group1e 2857284 85 - 12523060 UGGGGCAUUUACUUAGCUAAUUUAAGGCUUAAAAACCCUUUUGGUCAGCUAGGUGGACGAUGAAAGCGGCCAAGAGCCAUUUGCC ...(((((((((((((((.(((.((((.........))))..))).)))))))))))..........(((.....)))...)))) ( -23.60, z-score = -0.37, R) >droPer1.super_18 1747354 85 - 1952607 UGGGGCAUUUACUUAGCUAAUUUAAGGCUUAAAAACCCUUUUGGCCAGCUAGGUGGACGAUGAAAGCGGCCAAGAGCCAUUUGCC ...(((((((((((((((.......((((.(((.....))).)))))))))))))))..........(((.....)))...)))) ( -24.21, z-score = -0.25, R) >consensus UGUGGCAUUUACUCAGCUAAUUUAAAGCUUAAAAACCCCUUUGGCCAGCAAUGUGAACAAUGCCAGUGGCCAAGGGCCACUCGA_ .(((((........((((.......)))).........((((((((((((.((....)).)))...))))))))))))))..... (-23.57 = -24.13 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:37 2011