| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,319,568 – 6,319,666 |
| Length | 98 |
| Max. P | 0.769475 |
| Location | 6,319,568 – 6,319,666 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.20 |
| Shannon entropy | 0.51287 |
| G+C content | 0.49064 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -10.69 |
| Energy contribution | -12.41 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6319568 98 - 22422827 ------------GGCUUUGGACCCCGAUUCU-CCGGCGAGCAAUCACAGUCGCAGGCACAGAAUGUUCAUACA-UUUGCGGCCGAUUUC-GUGGUAUUAAGAGUCUGUUACUC-- ------------((((((..(((.(((.((.-...((((.(.......))))).(((...((((((....)))-)))...)))))..))-).)))....))))))........-- ( -28.20, z-score = -0.92, R) >dp4.chrXL_group1e 2854041 110 - 12523060 GUCAGCACAUUUGCGAGGAAAUAUUGAUUCCAUUGAUGAUCAAUC--UGUCAUCGGGGCUUAGCUGUCACCAAGUCUUUG-CCGUGGGGAUUAAUAUUAAAAGCCUCUAACUU-- ....(((....)))((((.((((((((((((.((((((((.....--.))))))))(((..((((.......)).))..)-))...)))))))))))).....))))......-- ( -33.50, z-score = -2.62, R) >droSim1.chrX 4963508 99 - 17042790 ------------GGCUUUGGAUCCCGAUUCU-CGGGCGAGCAAUCACAGUCACAGUCGCAGAAUGUUCAUGCAUUUUGCGGCCGAUUUC-GGGGUAUUAAGAGUCUGUUACUC-- ------------((((((..(((((((...(-(((((((....))...)))...((((((((((((....)))))))))))))))..))-)))))....))))))........-- ( -38.60, z-score = -4.00, R) >droSec1.super_4 5719755 99 + 6179234 ------------GGCUUUGGAUCCCGAUUCU-CGGGCGAGCAAUCACAGUCACAGUCACAGAAUGUUCAUGCAUUUUGCGGCCGAUUUC-GGGGUAUUAAGAGUCUGUUACUC-- ------------((((((..(((((((...(-(((.(((....)).............((((((((....)))))))).).))))..))-)))))....))))))........-- ( -34.00, z-score = -2.94, R) >droYak2.chrX 2304651 97 - 21770863 -----------GGCUUUUGGACGCCGAUUCU-CGGGCGAGCAAUCACAGUCACA-----GGAAUGUUCAUGCA-UUUGCGACCGAUUUCGGGGGUAUUAAAAGUCUGUCACUCCC -----------(((((((((.(.((((...(-(((..(((((.((.(.......-----))).))))).(((.-...))).))))..)))).)...))))))))).......... ( -28.30, z-score = -0.72, R) >droEre2.scaffold_4690 15274611 92 - 18748788 ------------GGCUUUGGACCCCGAUUCU-CGGGCGAGCAAUCACAGUCA------CAGAAUGUUCAUGCA-UUUGCGGCCGAUUUC-GGGGUAUUAAGAGUAUGUUACUC-- ------------.(((((..(((((((...(-(((.((((((.((.......------..)).)))))..((.-...))).))))..))-)))))....))))).........-- ( -33.10, z-score = -3.03, R) >consensus ____________GGCUUUGGACCCCGAUUCU_CGGGCGAGCAAUCACAGUCACAG_C_CAGAAUGUUCAUGCA_UUUGCGGCCGAUUUC_GGGGUAUUAAGAGUCUGUUACUC__ ............((((((..(((((.......(((.((((((.((...............)).)))))..((.....))).)))......)))))....)))))).......... (-10.69 = -12.41 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:36 2011