| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,304,577 – 6,304,672 |
| Length | 95 |
| Max. P | 0.544517 |
| Location | 6,304,577 – 6,304,672 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 84.25 |
| Shannon entropy | 0.30595 |
| G+C content | 0.39411 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -17.08 |
| Energy contribution | -16.76 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6304577 95 + 22422827 AAAGUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAAACAAAAAAAAAAAAAAAAACGCAAAAAA ........(((((((.....(((........(((((........))))).....(((((...))))).........))).....))))))).... ( -18.90, z-score = -1.03, R) >droSec1.super_4 5704287 89 - 6179234 AAAGUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAACUGAAAUAAA------ACACGCAAAAAA ........((((((...((((((........(((((........)))))...(((((((...))))).)))))))).------..)))))).... ( -20.10, z-score = -1.11, R) >droYak2.chrX 2291345 84 + 21770863 AAAGUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAAAUAAA-----------ACACGCAAAAAA ....(((((((((.((..((....)).....(((((........)))))...))..))).))))))......-----------............ ( -18.10, z-score = -0.60, R) >droEre2.scaffold_4690 15258929 84 + 18748788 AAAGUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCCGAGCGAAAUAAA-----------ACACGCAAAAAA ....(((((((.((.((.((((..(((.................)))..).))).)))))))))))......-----------............ ( -18.83, z-score = -0.95, R) >droAna3.scaffold_13335 1257991 95 - 3335858 AAAGUCGCUAGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUCAGCGAAAUAAAACACACACACACACUCCCAAACA ....(((((((((.((..((....)).....(((((........)))))...))..)))).)))))............................. ( -18.80, z-score = -1.58, R) >dp4.chrXL_group1e 2839679 90 + 12523060 AAAGUCGCCUGCGUUGAUUGUUUGCACUUUGCACGCUAAAAACUGUGUGACACAUUCGUUG-GCGAAAAAAACCGCAAA----ACUCACAACAAA ............((((....(((((....(((((((........))))).))..((((...-.)))).......)))))----.....))))... ( -18.80, z-score = 0.26, R) >droPer1.super_18 1729603 90 + 1952607 AAAGUCGCCUGCGUUGAUUGUUUGCACUUUGCACGCUAAAAACUGUGUGACACAUUCGCUG-GCGAAAAAAACCGCAAA----ACUCACAACAAA ....(((((.(((.((..((....))...(((((((........))))).))))..))).)-)))).............----............ ( -19.90, z-score = -0.22, R) >consensus AAAGUCGCUUGCGUUGAUUGUUUGCACUUUACACACUAAAAACUGUGUGACACAUUCGCUGAGCGAAAUAAAACACA_A____ACACGCAAAAAA (((((.((..(((.....)))..))))))).(((((........))))).....(((((...)))))............................ (-17.08 = -16.76 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:31 2011