| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,292,338 – 6,292,429 |
| Length | 91 |
| Max. P | 0.617470 |
| Location | 6,292,338 – 6,292,429 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 64.12 |
| Shannon entropy | 0.55563 |
| G+C content | 0.49091 |
| Mean single sequence MFE | -22.10 |
| Consensus MFE | -13.29 |
| Energy contribution | -13.85 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6292338 91 + 22422827 -------AGCUGAAAUGUAAUCCUUUGCUGCGAUUAGAGGAGCAGUUGAGGAGCAACGGGGCUAAGGGCUAAGGGCUAAGGGGUCAGGGGUCAGAGUC- -------..(((...(((..(((((.(((((..........))))).)))))))).)))((((...((((...((((....))))...))))..))))- ( -27.60, z-score = -1.42, R) >droSim1.chrX_random 2046654 84 + 5698898 -------AGCUGAUAUGUAAUCCUUUGCUGCGAUAAGAGGAGCAGUUGAGGAGCAACGGGACCAAGGGCUAAGGGGUCAAGGGUCAGAGUC-------- -------..(((...(((..(((((.(((((..........))))).)))))))).)))((((...((((....))))...))))......-------- ( -26.50, z-score = -2.09, R) >droSec1.super_4 5693658 84 - 6179234 -------AGCUGAUAUGUAAUCCUUUGCUGCGAUAAGAGGAACAGUUGAGGAGCAACGGGACCAAGGGCUAAGGGGUCAGGGGUCAGAGUC-------- -------..(((...(((..(((((.((((............)))).)))))))).)))((((...((((....))))...))))......-------- ( -21.80, z-score = -0.50, R) >droAna3.scaffold_13335 1243972 98 - 3335858 AAUGUCCAGUAAAAAUUAAAUCCUUUUUUGUCGCGACAAUAACAAC-AAGGAUAUACGAAACAAAAGAAUCAACCAAAGGGGGGUAGAGGUGACAGGUC .....((............((((((((((((..((...(((.(...-...).))).))..)))))))).....((....))))))...(....).)).. ( -12.50, z-score = 1.16, R) >consensus _______AGCUGAAAUGUAAUCCUUUGCUGCGAUAAGAGGAACAGUUGAGGAGCAACGGGACCAAGGGCUAAGGGGUAAGGGGUCAGAGGC________ ...............(((..(((((.(((((..........))))).))))))))....((((...((((....))))...)))).............. (-13.29 = -13.85 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:31 2011