| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,288,855 – 6,288,970 |
| Length | 115 |
| Max. P | 0.658097 |
| Location | 6,288,855 – 6,288,970 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 53.40 |
| Shannon entropy | 0.84100 |
| G+C content | 0.40191 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -3.08 |
| Energy contribution | -3.72 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.11 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6288855 115 + 22422827 ----UAUCUCUGUGGAACGCAAAUGGCGUUUCACGGCAUACACAAGAGCUCACACAGUUCAUUUACGAAAAAAACAUCGACGUAAUGCUACUAUCAGAAACGCACCUCACAAAUAAAAA ----....((((((((((((.....)))))))))(((((((....(((((.....))))).....(((........)))..)).)))))......)))..................... ( -25.70, z-score = -3.17, R) >droSim1.chr2h_random 2465970 119 + 3178526 CGCCUCGGAACCUGGAAAGCUCGUAGCAUUAUCCCCAAUGCUAAUGAGCUUAAGGUGUUUUUUAUCACACACGAAAUUGAUGUUAUGCUUAUCUCAGAGGCAUUCCUACACUCCGGAUC .(((((.((((((...((((((((((((((......)))))).)))))))).))))((....(((((..........)))))....)).....)).)))))..(((........))).. ( -35.30, z-score = -3.14, R) >droSec1.super_67 72390 118 + 170185 CGCCUCGGAACCUGGAA-GCUCGUAGCAUUAUCCCCAAUGCUAAUGAGCUUAAAGUGUUUCUUAGCACACACGAAAUUGAUGUUAUGCUUAUCUCAGAGGCAUUCCUACACGCCGGAUC .((((((((((((..((-((((((((((((......)))))).))))))))..)).)))))..((((.(((((....)).)))..)))).......)))))..(((........))).. ( -38.50, z-score = -3.79, R) >droMoj3.scaffold_6680 15989130 115 + 24764193 ----UUAUGUGUUGGAACGCCAGAGGGGUUUCCAACAAAAUGCGUGAACUGGAACUCUUUGUUCAACUUCACGAUAUUCACAUUCUGCUAAUCAGUGAAACGCAAAUAGUAGACGGCUU ----..(((((((((((.(((.....))))))))))..((((((((((...((((.....))))...)))))).)))).))))(((((((....(((...)))...)))))))...... ( -31.30, z-score = -1.84, R) >anoGam1.chrU 14664320 114 - 59568033 ----UAUCAUACUGGAACGCAAACGGUGUUUUAAAAAAGAAAAUUGAGCUAGAAAACUAUUUAAAGAAAAAAUAUGUUGACUUAAUGAUUAUAGUAGAAACAUUCUUAAACCGGGACA- ----.......(((((((((.....)))))......(((((..(((((.(((....))))))))..........((((.(((..........)))...)))))))))...))))....- ( -14.40, z-score = -0.19, R) >consensus ____UAGCAACCUGGAACGCAAGUGGCGUUUUCCACAAUACAAAUGAGCUUAAACUGUUUUUUAACAAACACGAAAUUGACGUUAUGCUUAUCUCAGAAACAUUCCUAAACGACGGAUC .............(((((((.....)))))))....................................................................................... ( -3.08 = -3.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:30 2011