| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,276,698 – 6,276,771 |
| Length | 73 |
| Max. P | 0.979876 |
| Location | 6,276,698 – 6,276,771 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 63.84 |
| Shannon entropy | 0.65865 |
| G+C content | 0.55840 |
| Mean single sequence MFE | -17.92 |
| Consensus MFE | -9.86 |
| Energy contribution | -9.86 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6276698 73 - 22422827 AUCAGUCAGUAAGCCCCACGACCUCUGACUCCGCCCGG--UCAGAGGUCAUUUCGCCACAGGAAACCUUUACGCG ........(((((......(((((((((((......))--))))))))).((((......))))...)))))... ( -23.50, z-score = -3.42, R) >droAna3.scaffold_13335 1232990 62 + 3335858 ----------ACGCCGCAGGACAUCCGUUGCUGCCAAA--GAGGAGAGGAUACUAAUCCA-GGUACCGUUACGCG ----------....(((..(((.(((.(((....))).--..)))..((.((((......-)))))))))..))) ( -13.20, z-score = 0.54, R) >droYak2.chrX 2271038 66 - 21770863 AUCAGUCGGUAAGUCCCACGACCUCUGACCCC---------UGGCGGUCAUACCAGAUGAUGGAAACCUUCAGCA ....(((((...(((....)))..)))))..(---------(((.(((....(((.....)))..))).)))).. ( -15.40, z-score = 0.28, R) >droSec1.super_4 5684172 75 + 6179234 AUCAGUCAGUAAGCCCCACGACCUCUGACCCCCUCUGACCUCAGAGGUAAUUUCGCCAGAGGAAACCUUUACGCG ....(((((....(.....)....)))))..((((((....))))))......(((.(((((...)))))..))) ( -18.50, z-score = -2.06, R) >droSim1.chrX_random 2036372 75 - 5698898 AUCAGUCAGUAAGCCCCACGACCUCUGACCCCCUCUGACCUCAGAGGUCAUUUCGCCAGAGGAAACCUUUACGCG ...................(((((((((............)))))))))....(((.(((((...)))))..))) ( -19.00, z-score = -2.00, R) >consensus AUCAGUCAGUAAGCCCCACGACCUCUGACCCCCCCUGA__UCAGAGGUCAUUUCGCCAGAGGAAACCUUUACGCG ............((.....(((((((((............))))))))).((((.......)))).......)). ( -9.86 = -9.86 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:27 2011