| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,255,419 – 6,255,478 |
| Length | 59 |
| Max. P | 0.656452 |
| Location | 6,255,419 – 6,255,478 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 61.38 |
| Shannon entropy | 0.73707 |
| G+C content | 0.55979 |
| Mean single sequence MFE | -17.92 |
| Consensus MFE | -5.66 |
| Energy contribution | -6.42 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6255419 59 - 22422827 UGCAGUUUCGGUCACACUGGCAGUGGCUGCUUU-GCGACUUCGGCCACACUGGCAGUUCC .((((...(((((((.......)))))))..))-))((((...(((.....))))))).. ( -17.60, z-score = 0.18, R) >droSim1.chrX 4928016 50 - 17042790 ---------GGCCACACUGGCAGUGGAUGCUUG-GCGACUUCGGCCACACUGCCAGUGCC ---------.....(((((((((((...(((.(-....)...)))..))))))))))).. ( -24.50, z-score = -2.64, R) >droSec1.super_4 5664447 50 + 6179234 ---------GGUCUCACUGGCAUUGGAUGCUUG-GCGACUUCGGCCACACUGCCAGUGCC ---------.........((((((((.....((-((.......)))).....)))))))) ( -18.60, z-score = -1.51, R) >droYak2.chrX 2249485 58 - 21770863 UGCUGACUCGGUCACACUAACAGUGGCCGCUUCGGCGACUUACGCCACACCGACAGUU-- .((((...(((((((.......)))))))....((((.....)))).......)))).-- ( -20.20, z-score = -2.45, R) >droEre2.scaffold_4690 15220045 59 - 18748788 UGCAGAUUCAGUCACACUGGCAGUGGCCGUUGC-GCGACUUCGGUCACACUGGCAAUUAC (((....((((.....))))(((((((......-))(((....))).))))))))..... ( -18.70, z-score = -1.20, R) >triCas2.chrUn_6 836223 50 - 1398711 UGCAAUUGAGGUAACGUUGAUAAU----GUUAUGUCUUUUUUUACCGCA--GAUAG---- .....(((.(((((....((((..----....)))).....))))).))--)....---- ( -7.90, z-score = -0.65, R) >consensus UGCAG_UUCGGUCACACUGGCAGUGGCUGCUUC_GCGACUUCGGCCACACUGACAGUUCC ...............((((.(((((..(((....))).(....)...))))).))))... ( -5.66 = -6.42 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:27 2011