| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,252,104 – 6,252,187 |
| Length | 83 |
| Max. P | 0.885101 |
| Location | 6,252,104 – 6,252,187 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 52.10 |
| Shannon entropy | 0.88190 |
| G+C content | 0.28875 |
| Mean single sequence MFE | -13.53 |
| Consensus MFE | -4.78 |
| Energy contribution | -3.78 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 2.11 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885101 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 6252104 83 + 22422827 UAACAAUUGAAGAUCACUUCCUUCC------------UAUAUGUGUACAUAUAUAUAUGAUCUCAAAGCGAUUCUUUUGCAUAUGUAAUUUAAAU ..(((.((((.(((((.........------------((((((((....))))))))))))))))).((((.....))))...)))......... ( -13.70, z-score = -1.86, R) >droEre2.scaffold_4690 15216560 95 + 18748788 UUUCAAUUGAAGUGACGUCUUUUCUAUCGUUCAACUAUGUAUAUGUGUAUACAUAUAUGAUCUCGAAACGAUUCUUAUGCAUAUGAAAUUUAUAC (((((..((....((.(((.((((.(((((.....((((((((....)))))))).)))))...)))).))))).....))..)))))....... ( -14.40, z-score = 0.23, R) >droSec1.super_4 5661091 79 - 6179234 UUUCAUUUGAAGAUCCCUCUUUUCUUA--------UAUAUGUACGAACAUAUAUAUAUGAUCUC--------UCUUUUGCAAAUGUAAUUUAAAC ...((((((((((....)))).((.((--------(((((((....)))))))))...))....--------.......)))))).......... ( -11.70, z-score = -2.33, R) >droSim1.chrX 4925210 83 + 17042790 UUUCAUUUGAAGAUCCCGCUUUUCU------------UAUAUGUGUACGUACAUAUAUGAUCUCAAAGCGUUUCUUUUGCAUAUGUAAUUUAAAC ...(((..(((((...((((((..(------------(((((((((....))))))))))....))))))..))))).....))).......... ( -17.30, z-score = -3.17, R) >droPer1.super_15 1303074 65 - 2181545 UAAAAUAUGAUGAGCACGUACUACA----------CGGAUGUGCGUACAUAUAUAUAUCAUGUAACAGCGUUUAC-------------------- ....((((((((.((((((.((...----------.))))))))(((....))).))))))))............-------------------- ( -12.10, z-score = 0.05, R) >droGri2.scaffold_15126 2727542 80 - 8399593 UUGCAUAUCAAAGGUGAAUGCAAUUAAU---------UAU-CAAAUGCUUGUUUGCAAAAUAACAAAUUUACAUUUCUGCAAAUGGAAAG----- ((((((.(((....))))))))).....---------...-.......(..((((((((((...........)))).))))))..)....----- ( -12.00, z-score = 0.20, R) >consensus UUUCAUUUGAAGAGCCCUCUCUUCU____________UAUAUAUGUACAUAUAUAUAUGAUCUCAAAGCGAUUCUUUUGCAUAUGUAAUUUAAAC .....................................(((((((((....))))))))).................................... ( -4.78 = -3.78 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:26 2011