| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,246,742 – 6,246,801 |
| Length | 59 |
| Max. P | 0.753838 |
| Location | 6,246,742 – 6,246,801 |
|---|---|
| Length | 59 |
| Sequences | 7 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 85.15 |
| Shannon entropy | 0.27541 |
| G+C content | 0.36132 |
| Mean single sequence MFE | -10.33 |
| Consensus MFE | -9.49 |
| Energy contribution | -8.51 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6246742 59 - 22422827 -UUCUUAAUCGCAAGCACAUGUCUGGAAAUU--CUUUUUUUUUCAAUUCCAGCGUGACGUGU -.........(((....((((.((((((...--.............))))))))))...))) ( -10.69, z-score = -1.16, R) >droPer1.super_25 537368 54 - 1448063 UUUCUUAAUCGCAAGCACAUGGCGGAA------UCUUUUUUUUU--UUUUUGUGUGACGUGU ..........(((..((((..(..(((------.........))--)..)..))))...))) ( -8.70, z-score = -0.44, R) >droAna3.scaffold_13335 1205708 57 + 3335858 -UUCUUAAUCGCAAGCACAUGGCUGAAAUUU--UUUUUCUUUUU--UUUUUGCGUGACGUGU -........(((((((.....)))((((...--..)))).....--....))))........ ( -7.20, z-score = 0.32, R) >droEre2.scaffold_4690 15211256 62 - 18748788 UUUCUUAAUCGCAAGCACAUGUCUGGAAAUUCUUUUUUUUUUUCAAUUCCAGCGUGACGUGC ..........(((....((((.((((((..................))))))))))...))) ( -11.97, z-score = -1.56, R) >droYak2.chrX 2240541 61 - 21770863 UUUCUUAAUCGCAAGCACAUGUCUGGAAAUUC-UUUUUUUUUUCAAUUCCAGCAUGACGUGC ..........(((....((((.((((((....-.............))))))))))...))) ( -12.43, z-score = -2.06, R) >droSec1.super_4 5655869 60 + 6179234 -UUCUUAAUCGCAAGCACAUGUCUGGAAAUUC-UUUUUUUUUUCAAUUCCAGCGUGACGUGU -.........(((....((((.((((((....-.............))))))))))...))) ( -10.63, z-score = -1.13, R) >droSim1.chrX 4919953 59 - 17042790 -UUCUUAAUCGCAAGCACAUGUCUGGAAAUU--CUUUUUUUUUCAAUUCCAGCGUGACGUGU -.........(((....((((.((((((...--.............))))))))))...))) ( -10.69, z-score = -1.16, R) >consensus _UUCUUAAUCGCAAGCACAUGUCUGGAAAUU__UUUUUUUUUUCAAUUCCAGCGUGACGUGU ..........(((....((((.((((((..................))))))))))...))) ( -9.49 = -8.51 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:25 2011