| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,229,052 – 6,229,157 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 6,229,052 – 6,229,157 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.61 |
| Shannon entropy | 0.36274 |
| G+C content | 0.43034 |
| Mean single sequence MFE | -31.14 |
| Consensus MFE | -15.71 |
| Energy contribution | -18.39 |
| Covariance contribution | 2.68 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 6229052 105 + 22422827 -------UUCCCCACGUUUCGAUCUUUUUUUAUUCGCUGAUUUACGAAUCACUUGAAGACGAAAAACAGGCGGUUUGAAAAUAAGGUGAGGGGGAGGGGGGCAAGGGAAUGG -------(((((...((..(..(((((.....((((((.((((.((((((.((((...........)))).)))))).))))..)))))))))))..)..))..)))))... ( -27.50, z-score = -0.65, R) >droSim1.chrX_random 2016980 107 + 5698898 UUUUCUGUUCCCCACGUUUUGAUCUUUUUUUAUUCGCUGAUUUACGAAUCACUUGAAGACGAGUGACAGGCGGUUUGAAAAAAAGG-----GGGGUCGGGGCAUGGGGAUGG ........((((((.((((((((((((((((.(((((((.....(...(((((((....)))))))..).))))..)))..)))))-----))))))))))).))))))... ( -35.70, z-score = -2.56, R) >droSec1.super_4 5640090 106 - 6179234 UUUUCUGUUCCCCACGUUUCGAUCUUUUUUUAUUCGCUGAUUUACGAAUCACUUGAAGACAAGUGACAGGCGGUUU-AAAAAAAAG-----GUGGUGGGGGCAUGGGAAUGG .((((((((((((((....(.((((((((((..(((((..........(((((((....)))))))..)))))...-.))))))))-----)))))))))).)))))))... ( -32.50, z-score = -2.26, R) >droYak2.chrX 2224242 106 + 21770863 UCUUGUGUUCCCCACGUUUCGAUCUUUUUUUAUUUGCUGAUUUACGAAUCACUUGAAGACGAGUGACAGGCGGUAAAAAAAAUAAA------AGGGGGAGGAAUGCGAAUGA ..(((((((((((.(.(((..((.((((((((((.(((..........(((((((....)))))))..)))))))))))))))..)------)).))).))))))))).... ( -27.70, z-score = -1.41, R) >droEre2.scaffold_4690 15196617 101 + 18748788 GAAUCUGUUCCCCACUUUUCGAUCUUUUUUUAUUCGCUGAUUUACGAAUCACUUGAAGACGAGUGACAGGCGGUAAGAAAAAGAGG------AUGGAAAGGGAAUGG----- ....((((((((....((((.((((((((((.((..(((.....(...(((((((....)))))))..).)))..)).))))))))------)).))))))))))))----- ( -32.30, z-score = -2.94, R) >consensus UUUUCUGUUCCCCACGUUUCGAUCUUUUUUUAUUCGCUGAUUUACGAAUCACUUGAAGACGAGUGACAGGCGGUUUGAAAAAAAGG_____GAGGGGGGGGCAUGGGAAUGG ..((((((.((((.........(((((((((..(((((..........(((((((....)))))))..)))))....)))))))))...........)))).)))))).... (-15.71 = -18.39 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:20 2011