| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,224,324 – 6,224,475 |
| Length | 151 |
| Max. P | 0.772945 |
| Location | 6,224,324 – 6,224,475 |
|---|---|
| Length | 151 |
| Sequences | 6 |
| Columns | 151 |
| Reading direction | forward |
| Mean pairwise identity | 75.54 |
| Shannon entropy | 0.47848 |
| G+C content | 0.47287 |
| Mean single sequence MFE | -45.44 |
| Consensus MFE | -27.27 |
| Energy contribution | -30.22 |
| Covariance contribution | 2.95 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6224324 151 + 22422827 AAGAGAACUUUAACGUUGAAAAUAGUUCGCAUUGUGUUGCAUUUAUUUAUUGGUUCUCAUUUCGCGUUUUGGCGACACGUGUAAACGUGUUGCACUGAGCGUCGCUCUCACUGCGCAUGCGCGCUCACUUUUUCUAGACGGAGAGUGAGAG ..(((((((........(((.....)))(((......)))...........)))))))....(((((((..(((((((((....)))))))))...))))).))((((((((((((....)))).......((((....)))))))))))) ( -51.40, z-score = -2.04, R) >droSim1.chrX_random 2010745 151 + 5698898 AAGAGAAGUUUAACGUUGAAGAUAGUUCGCGUUAUGUUGCAUUUAUUCAUUGGUUCUCAUUUCGCGUUUUGGCGACACGUGUAAACGUGUUGCACUGAGCGUCGCUCUCACUGCGCAUGCGCGCUCUCUUUUUCUCGACGGAGAGUGAGAG ..(((((...((((((.(((.....))))))))).....((.........)).)))))....(((((((..(((((((((....)))))))))...))))).))(((((((.((((....))))(((((.((....)).)))))))))))) ( -50.20, z-score = -1.11, R) >droSec1.super_4 5635191 151 - 6179234 AAGAGAAGUUUAACGUUGAAGAUAGUUCGCGUUAUGUUGCAUUUAUUCAUUGGUUCUCAUUUCGCGUUUUGGCGACACGUGUAAACGUGUUGCACUGAGCGUCACUCUCACUGCGCAUGCGCGCUCUCUUUUUCUCGACGGAGAGUGAGAG ..(((((...((((((.(((.....))))))))).....((.........)).))))).....((((((..(((((((((....)))))))))...))))))..(((((((.((((....))))(((((.((....)).)))))))))))) ( -50.40, z-score = -1.56, R) >droYak2.chrX 2219355 151 + 21770863 CAGAACACUUUAGCGUUGAAGAUAAUAUGCGUUAUGUUAAAUUUGUUUAUUGGCUGUCAUUUCGCGUUUAAGCGACACGUGUAAACGUGUUGCACUGAGCGUCGCUCUCCCUGCGCAUGCGCACUCUCUUUUUCUUGACGGAGAGUGAGAG (((.........(((.(((((.(((((.(((............))).))))).)).)))...)))......(((((((((....))))))))).))).(((((((.......))).)))).((((((((.((....)).)))))))).... ( -46.50, z-score = -1.22, R) >droEre2.scaffold_4690 15191568 151 + 18748788 UAGCAAACAUUAACAUUGAAGGUAAUUUGCGUUAUGUUGCAUAUUUUUAUCAGUUCGCAUAUCACGUUUUGUCGACACGUGUAAACGUGUUGCACUGAGCGGCGCUCUCACUGCGCAUGCGUGCUCUCUUUUUCUCGACGGAGAGUGAGAG .((((.........(((((..(.(((.((((......)))).))).)..))))).(((((....(((((.((((((((((....)))))))).)).)))))((((.......)))))))))))))(((((.(((((....))))).))))) ( -50.40, z-score = -2.27, R) >dp4.chrXL_group1a 2357152 127 - 9151740 ---------UAAACGUCGCAAACAACCCA----AUCACGCACACACACACAGCCGCGCAUUCU----------GACACACUGACACGCACUCAAAUGACCCGCUCUC-CACUGCGCAGGCGCGCUCUCAACCUAGAGAGAGAGAGAGAGAG ---------.....(((((..........----.....))..............(((...((.----------........))..)))........)))...(((((-(.(((((....))).(((((......))))))).).))))).. ( -23.76, z-score = 0.47, R) >consensus AAGAGAACUUUAACGUUGAAGAUAAUUCGCGUUAUGUUGCAUUUAUUCAUUGGUUCUCAUUUCGCGUUUUGGCGACACGUGUAAACGUGUUGCACUGAGCGUCGCUCUCACUGCGCAUGCGCGCUCUCUUUUUCUCGACGGAGAGUGAGAG ...............................................................((((((..(((((((((....)))))))))...))))))..(((((...(((....)))(((((((.((....)).)))))))))))) (-27.27 = -30.22 + 2.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:19 2011