| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,217,240 – 6,217,326 |
| Length | 86 |
| Max. P | 0.789091 |
| Location | 6,217,240 – 6,217,326 |
|---|---|
| Length | 86 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.29898 |
| G+C content | 0.42589 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -13.55 |
| Energy contribution | -13.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6217240 86 + 22422827 AACUCCAUUUCCUUGUUUUAGUGUGUACACUGCGGGAAAUUGGUGUUGUGAUUCAAUUCGGUGCACCAUUUUUGUCUUAAAUUGAG ..(((.(((((((.((...((((....)))))))))))))((((((..(((......)))..))))))...............))) ( -20.20, z-score = -1.42, R) >droSim1.chrX_random 2005288 66 + 5698898 GAGUCCAUUUCCUCGUUUUAGUGUGUGCACUGCGGGAAAAUGGUG------------------CAGCCUUCUUGUCUUAAAUUG-- ..((((((((.(((((...((((....))))))))).)))))).)------------------)....................-- ( -16.60, z-score = -1.61, R) >droSec1.super_4 5628241 66 - 6179234 GAGUCCAUUUCCUCGUUUUAGUGUGUACACUGCGGGAAAAUGGUG------------------CAGCCUUCUUGUCUUAAAUUG-- ..((((((((.(((((...((((....))))))))).)))))).)------------------)....................-- ( -16.30, z-score = -1.78, R) >consensus GAGUCCAUUUCCUCGUUUUAGUGUGUACACUGCGGGAAAAUGGUG__________________CAGCCUUCUUGUCUUAAAUUG__ ....((((((.(((((...((((....))))))))).))))))........................................... (-13.55 = -13.67 + 0.11)
| Location | 6,217,240 – 6,217,326 |
|---|---|
| Length | 86 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.29898 |
| G+C content | 0.42589 |
| Mean single sequence MFE | -13.43 |
| Consensus MFE | -10.83 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6217240 86 - 22422827 CUCAAUUUAAGACAAAAAUGGUGCACCGAAUUGAAUCACAACACCAAUUUCCCGCAGUGUACACACUAAAACAAGGAAAUGGAGUU (((...............(((((....((......))....)))))((((((...((((....)))).......)))))).))).. ( -14.10, z-score = -0.49, R) >droSim1.chrX_random 2005288 66 - 5698898 --CAAUUUAAGACAAGAAGGCUG------------------CACCAUUUUCCCGCAGUGCACACACUAAAACGAGGAAAUGGACUC --.....................------------------..((((((((.((.((((....))))....)).)))))))).... ( -12.70, z-score = -1.25, R) >droSec1.super_4 5628241 66 + 6179234 --CAAUUUAAGACAAGAAGGCUG------------------CACCAUUUUCCCGCAGUGUACACACUAAAACGAGGAAAUGGACUC --.....................------------------..((((((((.((.((((....))))....)).)))))))).... ( -13.50, z-score = -1.55, R) >consensus __CAAUUUAAGACAAGAAGGCUG__________________CACCAUUUUCCCGCAGUGUACACACUAAAACGAGGAAAUGGACUC ...........................................((((((((.((.((((....))))....)).)))))))).... (-10.83 = -11.50 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:18 2011