| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,397,351 – 10,397,466 |
| Length | 115 |
| Max. P | 0.835327 |
| Location | 10,397,351 – 10,397,466 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.46775 |
| G+C content | 0.30999 |
| Mean single sequence MFE | -18.79 |
| Consensus MFE | -8.72 |
| Energy contribution | -8.53 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10397351 115 - 23011544 AACAAAAAUCAAACCAGCUCGGAAAUAUACGCACUACCUGCGUACAUCAAUAAGUU---CUCAAAUUUAAAACGGAAGCUCUC--------UUUAAAACACAAUCAAAAAGAAAGUACAAUUUUCA ....................((((((.((((((.....))))))............---..................(((.((--------(((.............))))).)))...)))))). ( -13.32, z-score = -1.58, R) >droEre2.scaffold_4929 11006984 111 - 26641161 AACAGAAAUCAAACCAAUUUGGAAAUGUACGUACUACCUGCGUACAUAAACAAGUU---CUCAAAUUUAAAACGUAAGCUCUC--------UUUUAUA-ACUAGAAAAAAGAAAGU---AUUUUCA ....((((.......((((((...(((((((((.....)))))))))...))))))---..................(((.((--------((((...-.......)))))).)))---..)))). ( -20.00, z-score = -2.77, R) >droYak2.chr2L 13078241 112 - 22324452 AACAGAAAUCAAACCAAUUUGGAAAUGUACGCACUACCUGUGUACAUCAACAAGUU---CUCAAAUUUUAAACGUAAGCUUUC--------UUUAAAACGAUAAAAAAAAGAAAGU---AUUUCCA ....(((((......((((((...(((((((((.....)))))))))...))))))---..................((((((--------(((.............)))))))))---))))).. ( -22.12, z-score = -3.55, R) >droSec1.super_3 5825305 115 - 7220098 AACAGAAAUCAAACCAACUCGGAAAUGUACGCACUACCUGCGUACAUCAAUAAGUU---CUCAAAUUUAAAACGGAAGCUCUC--------UUAAAAACACGAACAAAAAGAAAGUACAAUUUUCA ....((((.....((.........(((((((((.....)))))))))...((((((---....))))))....))..(((.((--------((...............)))).))).....)))). ( -18.06, z-score = -2.22, R) >droSim1.chr2L 10187139 115 - 22036055 AACAGAAAUCAAACCAACUCGGAAAUGUACGCACUACCUGCGUACAUCAAUAAGUU---CUCAAAUUUAAAACGGAAGCUCUC--------UUGAAAACACGAACAAAAAGAAAGUACAAUUUUCA ....((((.....((.........(((((((((.....)))))))))...((((((---....))))))....))..(((.((--------((...............)))).))).....)))). ( -18.96, z-score = -1.97, R) >apiMel3.Group15 468625 123 + 7856270 AAUAAAUUACAAAUCAUUCUAAAUGUGUGCCUAUCUCUUGUA-ACAUU-GUACGUUAUACAUACAUAUGAAAUGAUAUCUCUUGAGCAAUGUAUAAUAUAUUAAUGACAUGCAAGUAUUAUGGCU- ............................(((((...((((((-.((((-(((..((((((((.(((.....)))...((....))...))))))))..)).)))))...))))))...)).))).- ( -20.30, z-score = -0.04, R) >consensus AACAGAAAUCAAACCAACUCGGAAAUGUACGCACUACCUGCGUACAUCAAUAAGUU___CUCAAAUUUAAAACGGAAGCUCUC________UUUAAAACACUAACAAAAAGAAAGUACAAUUUUCA ...............((((.(...(((((((((.....)))))))))...).))))...................................................................... ( -8.72 = -8.53 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:01 2011