| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,216,310 – 6,216,407 |
| Length | 97 |
| Max. P | 0.775124 |
| Location | 6,216,310 – 6,216,407 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Shannon entropy | 0.24682 |
| G+C content | 0.50656 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -16.38 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6216310 97 - 22422827 -----------------AACCGACCCCUUCGACCCGCGUCGAAUCGUGGCGACCCCUUCAAUGUCAAGCGCAUCCGUUUGUUUAAUAGGAAAUGUCGAAGCAACUUGAAAAAAA -----------------.........((((((((((((......))))).....(((.......((((((....))))))......)))....))))))).............. ( -23.52, z-score = -1.48, R) >droEre2.scaffold_4690 15183367 112 - 18748788 AAUCAGCCCGCCAACCAAGCCGACCCCCUCGA-CUCCGUCGAACCUUGGCGACCCCUUCAAUGUCAAGUGCAUCCGCUUGUUUAAUAGGAAAUGUCGAAGCAACUUGAAAAAC- ..((((...((.......(((((.....((((-(...)))))...)))))(((.(((.......((((((....))))))......)))....)))...))...)))).....- ( -23.32, z-score = -1.23, R) >droYak2.chrX 2211275 95 - 21770863 -----------------CCUCCACCCCUUCGA-CCCCGUCGAACCUUGGCGACCCCUUCAAUGUCAAGAGCAUCCGCUUGUUUAAUAGAAAAUGUCGAAGCUACUUGAAGAAA- -----------------.(.(((....(((((-(...))))))...))).).....(((....((((((((.((.((...(((....)))...)).)).))).))))).))).- ( -18.60, z-score = -1.58, R) >droSec1.super_4 5627409 96 + 6179234 -----------------AGCCGACCCCUUCGACCCCCGUCGAACCUUGGCGACCCCUUCAAUGUCAAGCGCAUCCGCUUGUUUAAUAGAAAAUGUCGAAGCAACUUGAAAAAC- -----------------.(((((....((((((....))))))..)))))(((...(((.((..((((((....))))))....)).)))...))).................- ( -23.80, z-score = -3.09, R) >droSim1.chrX 4913607 99 - 17042790 --------------ACCAGCCGACCCCUUCGACCCCCGUCGAACCUUGGCGACCCCUUCAAUGUCAAGCGCAUCCGCUUGUUUAAUAGGAAAUGUCGAAGCAACUUGAAAAAC- --------------....(((((....((((((....))))))..)))))(((.(((.......((((((....))))))......)))....))).................- ( -24.62, z-score = -2.57, R) >consensus _________________AGCCGACCCCUUCGACCCCCGUCGAACCUUGGCGACCCCUUCAAUGUCAAGCGCAUCCGCUUGUUUAAUAGGAAAUGUCGAAGCAACUUGAAAAAC_ ..........................(((((((...(((((.....)))))...(((.......((((((....))))))......)))....))))))).............. (-16.38 = -17.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:17 2011