| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,192,779 – 6,192,912 |
| Length | 133 |
| Max. P | 0.879748 |
| Location | 6,192,779 – 6,192,912 |
|---|---|
| Length | 133 |
| Sequences | 5 |
| Columns | 141 |
| Reading direction | reverse |
| Mean pairwise identity | 59.25 |
| Shannon entropy | 0.69863 |
| G+C content | 0.38697 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -9.23 |
| Energy contribution | -12.39 |
| Covariance contribution | 3.16 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6192779 133 - 22422827 AACGUAAUGGUUAAUUCAAUAAAUACGGCGUUUGAUACCAGAGAUCCACUGCCCACUGGCAUGGAUCAGCCUGCAGCCGUGCACAUCCG--------UGGUUUGUACUCCGUAUUUAUUGCACUGGUCAUAAGGCAAAUAU ...((.(((..((...((((((((((((.((.....((((..((((((.((((....))))))))))....((((....))))......--------))))....)).))))))))))))...))..)))...))...... ( -42.20, z-score = -2.27, R) >droAna3.scaffold_13117 1753969 102 - 5790199 ACCGUAAU-GUUGCUCCAGUAAAUUUACAA-AUAAUGUGUAAGAUAC-------------------------GUACAUGUGUACUUC----------UAUAGUAAAAUCCCUA-GGAUAAAAAUGA-CAUAAUGAGAGUAU ........-..((((((((((....)))..-....(((((.(((...-------------------------((((....)))).))----------)........((((...-)))).......)-)))).)).))))). ( -15.10, z-score = -0.22, R) >droEre2.scaffold_4690 15160106 128 - 18748788 AACAUUAUGGUUAAUUCAAUAAAUAAGGAGUUUGGCCCAAGAGAUGGGUGAGCUGCAUAGAUCA---CACCUGCACCUGUGCACUUU----------UGGAUUCAACUCCGUAUUUAUUGCACUGGUCAUUAGGCAAAUAU ..(...(((..((...(((((((((.((((((.(..(((((((..((((((.((....)).)))---).))((((....))))))))----------)))..).)))))).)))))))))...))..)))...)....... ( -38.10, z-score = -2.37, R) >droYak2.chrX 2188209 100 - 21770863 AACAUUAUGGUUAAUUCAAUAAAUAAGGAGUUUGGCCCAAAUGUUG-------------------------------CGUGCACUUU----------UGGGCUCAACUCCGUAUUUAUUGCACUGGUCAUAAGGCAAAUAU ....(((((..((...(((((((((.((((((.((((((((.((.(-------------------------------....))).))----------)))))).)))))).)))))))))...))..)))))......... ( -36.30, z-score = -5.20, R) >droSec1.super_4 5602912 141 + 6179234 AUCAUAAUGGUUAAUUCAAUAAAUAGGGAAUUUGCAACCAGAGAUCCACUGGCCACUGGCAUAGAUUAGCCUGCAGCCGUGCACAUCCGUGGUUUGAUGGUUUGAAUUCCGCAUUUAUUGCAAUGGACAUAAGGCAAAUAU .........(((.(((((((((((..((((((((.(((((..((.((((.(((..(.(((........))).)..)))(....)....)))).))..)))))))))))))..)))))))).))).)))............. ( -38.40, z-score = -0.81, R) >consensus AACAUAAUGGUUAAUUCAAUAAAUAAGGAGUUUGACACAAGAGAUCC_____C__C____AU_______CCUGCACCCGUGCACUUC__________UGGAUUCAACUCCGUAUUUAUUGCACUGGUCAUAAGGCAAAUAU ......(((((((...(((((((((.((((((((((((............................................................)))))))))))).)))))))))...)))))))........... ( -9.23 = -12.39 + 3.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:08 2011