| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,189,138 – 6,189,250 |
| Length | 112 |
| Max. P | 0.605598 |
| Location | 6,189,138 – 6,189,250 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.71 |
| Shannon entropy | 0.47429 |
| G+C content | 0.44333 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -12.14 |
| Energy contribution | -14.20 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6189138 112 - 22422827 UUUCGCUCAGACCUCACUAUAGACACCUAUAUG--UUUACAUCUUUUGGGCACACCACUAGCUAG--CACUCGCUGUUUUGGACCAACGCCCGCUAAAAGAGCAUCACAGCUGGCG ....(((((((........((((((......))--)))).....))))))).........(((((--(....(((.((((((.(........))))))).)))......)))))). ( -26.52, z-score = -1.50, R) >droEre2.scaffold_4690 15156418 97 - 18748788 -------------UUUUUCUCAGCCCUUAUAUACCUUUUUAAAAUUCGAGCACAACACUAG------CACCCGCAAAUUUGGCCUAAAGCACGCUAAAAGAGCAUCUCAGCUGGUC -------------...........................................(((((------(.........((((((.........)))))).(((...))).)))))). ( -12.10, z-score = 1.06, R) >droSec1.super_4 5599340 95 + 6179234 ---------------UCUAUUGACACCUAUAUG--UUUACAUCUUU----CACAACACUAGCUAGCGCACUAGCUGUUUUGGCCCAAAUUCCGCUAAAAGAGCAUCACAGCUGGCG ---------------......((((......))--)).........----..........((((((......(((.(((((((.........))))))).)))......)))))). ( -22.00, z-score = -1.92, R) >droSim1.chrX 4891821 103 - 17042790 -------AAAAAAAACCUAUUGACACCUAUAUG--UUUACAUCUUU----CACAACACUAGCUAGCGCACUCGCUGUUUUGGCCAAAAUUCCGCUAAAAGAGCAUCACAGCUGGCG -------.....((((.(((........))).)--)))........----..........((((((......(((.(((((((.........))))))).)))......)))))). ( -22.90, z-score = -2.36, R) >consensus _____________U_UCUAUUGACACCUAUAUG__UUUACAUCUUU____CACAACACUAGCUAG__CACUCGCUGUUUUGGCCCAAAGCCCGCUAAAAGAGCAUCACAGCUGGCG ............................................................((((((......(((.(((((((.........))))))).)))......)))))). (-12.14 = -14.20 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:07 2011