| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,158,233 – 6,158,349 |
| Length | 116 |
| Max. P | 0.986658 |
| Location | 6,158,233 – 6,158,349 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.18 |
| Shannon entropy | 0.26328 |
| G+C content | 0.47325 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -26.24 |
| Energy contribution | -26.44 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.986658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6158233 116 - 22422827 --AUCGUGUGCUUUUUUUUUUAAGAGUAUGUAUGCUAUCUUAGUCCGUGAUUCGUCAACCGUUUUUCA-UUGGCGGGCCUGGCCAAAACUCACUUGGCCCGCCAAGUGAGUCAUUGACU --...(..(((((((......)))))))..)..........((((.((((((((.(....(.....).-((((((((((.((..........)).))))))))))))))))))).)))) ( -38.90, z-score = -3.98, R) >droEre2.scaffold_4690 15128496 102 - 18748788 --AUCGGGUUC---UUUU----------UAUAUACUAUCUUGGUCCGUGAUUCGUCAACCGUUUUCCC-UUUGCGGGCCUGGCCAAAA-GCACUUGGCCCCGACAAUGAGUCAUUGACU --.((((....---....----------.............((((((..(..................-.)..)))))).((((((..-....))))))))))(((((...)))))... ( -28.41, z-score = -1.44, R) >droYak2.chrX 2162170 102 - 21770863 --AUCGUGUGC---UUUU----------UAUGUACUAUCUUGGUCCGUGAUUCGUCAACCGUUUUUCCUUUUGCGGGCCUGGCCAAAA-GCACUUGGCCCGCC-AGUGAGUCAUUGACU --.....((((---....----------...))))......((((.((((((((.(...(((..........)))(((..((((((..-....)))))).)))-.))))))))).)))) ( -31.10, z-score = -2.23, R) >droSec1.super_4 5567529 114 + 6179234 ACAUCGUGUGC---UUUUUAUACGAGUAUAUAUGCUAUCUUAGUCCGUGAUUCGUCAACCGUUUUUCC-UUGGCGGGCCUGGCCAAAA-UCACUUGGCUCGCCGAGUGAGUCAUUGACU .(((.((((((---((.......))))))))))).......((((.((((((((.............(-((((((((((.((......-...)).))))))))))))))))))).)))) ( -37.41, z-score = -3.24, R) >droSim1.chrX 4868690 114 - 17042790 ACAUCGUGUGC---UUUUUAUACGAGUAUGCAUGCUAUCUUAGUCCGUGAUUCGUCAACCGUUUUUCC-UUGGCGGGCCUGGCCAAAA-UCACUUGGCUCGCCGAGUGAGUCAUUGACU .(((.((((((---((.......))))))))))).......((((.((((((((.............(-((((((((((.((......-...)).))))))))))))))))))).)))) ( -38.31, z-score = -2.98, R) >consensus __AUCGUGUGC___UUUUU_UA_GAGUAUAUAUGCUAUCUUAGUCCGUGAUUCGUCAACCGUUUUUCC_UUGGCGGGCCUGGCCAAAA_UCACUUGGCCCGCCGAGUGAGUCAUUGACU .........................................((((.((((((((....)..........((((((((((.((..........)).))))))))))..))))))).)))) (-26.24 = -26.44 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:04 2011