| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,155,293 – 6,155,347 |
| Length | 54 |
| Max. P | 0.998040 |
| Location | 6,155,293 – 6,155,347 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 71.51 |
| Shannon entropy | 0.50574 |
| G+C content | 0.59414 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -9.82 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6155293 54 + 22422827 GCUCCGAA-AUGGAAUCGCCCAGUGCCCGAACUCUCGGGAAUUCCCUGGGCGAUG ..(((...-..)))(((((((((..(((((....)))))......))))))))). ( -25.30, z-score = -4.05, R) >droAna3.scaffold_13417 820049 55 + 6960332 GCUCCGAAUAUGGAAACCCGACAGUCUCGGGGGGAUUACGUCAGUUCGGAGGUGG .(((((((((((....(((((.....))))).......)))..)))))))).... ( -19.50, z-score = -1.25, R) >droYak2.chrX 2159301 54 + 21770863 GCUCCGAA-AUGGAAUCUCCCAGUGCUCGAACACUCGGGAAUUCUCUGGCGGAUG ..((((..-(.(((((.((((((((......)))).))))))))).)..)))).. ( -19.90, z-score = -2.95, R) >droSec1.super_4 5564630 54 - 6179234 GUUCCGAA-AUGGAAUCGCCCAGCGCUCGAACACUCGGCAAUUCCCCGGGCGAUG ..(((...-..)))(((((((.(.((.(((....)))))......).))))))). ( -15.60, z-score = -0.56, R) >droSim1.chrX 4865606 54 + 17042790 GUUCCGAA-AUGGAAUCGCCCAGCGCUCGAACACUCGGCAAUUCCCCGGGCGAUG ..(((...-..)))(((((((.(.((.(((....)))))......).))))))). ( -15.60, z-score = -0.56, R) >consensus GCUCCGAA_AUGGAAUCGCCCAGCGCUCGAACACUCGGCAAUUCCCCGGGCGAUG ..(((......)))(((((((.......((....))(((....))).))))))). ( -9.82 = -10.06 + 0.24)
| Location | 6,155,293 – 6,155,347 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 71.51 |
| Shannon entropy | 0.50574 |
| G+C content | 0.59414 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.24 |
| SVM RNA-class probability | 0.998040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6155293 54 - 22422827 CAUCGCCCAGGGAAUUCCCGAGAGUUCGGGCACUGGGCGAUUCCAU-UUCGGAGC .(((((((((......((((......))))..)))))))))(((..-...))).. ( -24.60, z-score = -3.08, R) >droAna3.scaffold_13417 820049 55 - 6960332 CCACCUCCGAACUGACGUAAUCCCCCCGAGACUGUCGGGUUUCCAUAUUCGGAGC ....((((((((....))......(((((.....))))).........)))))). ( -14.60, z-score = -0.99, R) >droYak2.chrX 2159301 54 - 21770863 CAUCCGCCAGAGAAUUCCCGAGUGUUCGAGCACUGGGAGAUUCCAU-UUCGGAGC ..((((.....((((..((.(((((....))))).))..))))...-..)))).. ( -19.80, z-score = -2.75, R) >droSec1.super_4 5564630 54 + 6179234 CAUCGCCCGGGGAAUUGCCGAGUGUUCGAGCGCUGGGCGAUUCCAU-UUCGGAAC ......(((((((((((((.(((((....))))).)))))))))..-.))))... ( -26.50, z-score = -3.39, R) >droSim1.chrX 4865606 54 - 17042790 CAUCGCCCGGGGAAUUGCCGAGUGUUCGAGCGCUGGGCGAUUCCAU-UUCGGAAC ......(((((((((((((.(((((....))))).)))))))))..-.))))... ( -26.50, z-score = -3.39, R) >consensus CAUCGCCCGGGGAAUUGCCGAGUGUUCGAGCACUGGGCGAUUCCAU_UUCGGAGC ......((((((((((.((.(((((....))))).)).))))))....))))... (-13.02 = -13.70 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:03 2011