| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,392,910 – 10,393,000 |
| Length | 90 |
| Max. P | 0.720627 |
| Location | 10,392,910 – 10,393,000 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 67.80 |
| Shannon entropy | 0.51231 |
| G+C content | 0.34333 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -7.64 |
| Energy contribution | -6.36 |
| Covariance contribution | -1.28 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10392910 90 + 23011544 AGAGACACGUUCACGUGUUGUAUCAUUUAAUUAAUUAUAUACAUAAUUUCGCGCUAGGGUAGGGCAAUCGGAAUUAAGCGAGUGAUGCCA ...((((((....))))))(((((((((..((((((.((....)).....((.(((...))).))......))))))..))))))))).. ( -20.70, z-score = -1.19, R) >droPer1.super_1 1351501 72 + 10282868 ------------AGAAAAUUUGUAAUAUGGUUA-UCAAUUAUAUAGUUUUCUACUA---UAGGG-AACUGGAAUUU-GCAAAUUAUGACG ------------....(((((((((((((((..-...))))))(((((..(((...---)))..-)))))....))-)))))))...... ( -14.40, z-score = -2.60, R) >dp4.Unknown_group_3 73803 72 + 156060 ------------AGAAAAUUUGUAAUAUGGUUA-UCAAUUAUAUAGUUUUCUACUA---UAGGG-AACUGGAAUUU-GCAAAUUAUGACG ------------....(((((((((((((((..-...))))))(((((..(((...---)))..-)))))....))-)))))))...... ( -14.40, z-score = -2.60, R) >droSec1.super_3 5820805 90 + 7220098 AGAGACACGUUCACGUGUUGUAUCAUUUAAUUAAUUAUAUGCAUAAUUUCGCGCUAGGGUAGGGCAAUCGGAAUUAAGCGAGUGAUGCCA ...((((((....))))))(((((((((............((.((((((((.(((.......)))...)))))))).))))))))))).. ( -23.80, z-score = -1.83, R) >droSim1.chr2L 10182667 90 + 22036055 AGAGACACGUUCACGUGUUGUAUCAUUUAAUUAAUUAUACACAUAAUUUCGCGCUAGGGUAGGGCAAUCGGAAUUAAGCGAGUGAUGCCA ...((((((....))))))(((((((((..((((((.((....)).....((.(((...))).))......))))))..))))))))).. ( -20.50, z-score = -1.12, R) >consensus AGAGACACGUUCACGUGUUGUAUCAUUUAAUUAAUUAUAUACAUAAUUUCGCGCUAGGGUAGGGCAAUCGGAAUUAAGCGAGUGAUGCCA ...................(((((((((((....)).......((((((((.(((.......)))...))))))))...))))))))).. ( -7.64 = -6.36 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:00 2011