| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,126,347 – 6,126,441 |
| Length | 94 |
| Max. P | 0.513278 |
| Location | 6,126,347 – 6,126,441 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 65.63 |
| Shannon entropy | 0.60417 |
| G+C content | 0.31688 |
| Mean single sequence MFE | -5.80 |
| Consensus MFE | -3.07 |
| Energy contribution | -3.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6126347 94 + 22422827 --------AAACCUAGAAAGAAACACACAACAACACACACCACACAGAUCACAAAUCACAGAUCACAAAUAAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC-- --------......................................((((..........)))).(((((((..(((((....)))))....)))))))...-- ( -6.80, z-score = -1.58, R) >droSec1.super_4 5535721 85 - 6179234 --------AAACCUAGUAAAGAA---------ACACACACCACACAGAUCACAAAUCACAGAUCACAAAUAAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC-- --------...............---------..............((((..........)))).(((((((..(((((....)))))....)))))))...-- ( -6.80, z-score = -0.82, R) >droEre2.scaffold_4690 15096585 77 + 18748788 --------AAACCUAGAAAAGAA---------ACACACAACACACCA--CACAAAUCACA------AAAUAAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC-- --------...............---------...............--...........------......((.(((((.(((....)))))))).))...-- ( -3.10, z-score = -0.42, R) >dp4.chrXL_group1e 10292389 77 + 12523060 --------AAAUCGAAAAAAAAA---------CCACACA-CACACUCA-CACAAACAAAA------AAUGGAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC-- --------..((((((.......---------(((....-........-...........------..))).....((((.(((....))))))))))))).-- ( -4.91, z-score = -0.60, R) >droPer1.super_69 114618 76 - 344178 --------AAAUCGAAAAAAAA----------CCACACA-CACACUCA-CAUAAACAAAA------AAUGGAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC-- --------..((((((......----------(((....-........-...........------..))).....((((.(((....))))))))))))).-- ( -4.91, z-score = -0.44, R) >droVir3.scaffold_13042 2324357 91 - 5191987 --------AACCCUAAGAACUAC----AUACAUUAUA-AUUAUAAUAAUAAUCGACAAACGAACACGAAAAGUAUAUAGACGCUUAUGAGCUUUAUUUGAACAC --------...........(((.----(((((((((.-...))))).....(((.....))).........)))).)))..(((....)))............. ( -7.80, z-score = -1.18, R) >droGri2.scaffold_14853 8968356 101 - 10151454 GAGACAAAGAAGAGAAUACAGAAUACAGAA-GGAAUGGAAUGGACAAAUAUCACAGAAAAGAACACGAAAAGUAUAUAGACGCUUAUGAGCUUUAUUUGAUG-- .........................((((.-....((..(((......)))..)).............(((((.(((((....))))).))))).))))...-- ( -6.30, z-score = 0.54, R) >consensus ________AAACCUAAAAAAAAA_________ACACACA_CACACAAAUCACAAACAAAAGA_CACAAAUAAUAUAUAGACGCUUAUGAGCUUUAUUUGAUC__ ........................................................................((.(((((.(((....)))))))).))..... ( -3.07 = -3.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:58 2011