| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,113,455 – 6,113,555 |
| Length | 100 |
| Max. P | 0.871793 |
| Location | 6,113,455 – 6,113,555 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 69.80 |
| Shannon entropy | 0.53742 |
| G+C content | 0.39872 |
| Mean single sequence MFE | -20.84 |
| Consensus MFE | -10.82 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6113455 100 - 22422827 UAUGAAACAGCACAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUCAUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAA-- .........((.((((((((((((..((.....))...)))))))))))).....(((((.........)))))..................))......-- ( -20.20, z-score = -0.94, R) >droSim1.chrX 4828812 100 - 17042790 UAUGAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGCUGUAUCCACCAUCAUCAUUAUUCGCCCGUAA-- ...((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)).........................-- ( -24.60, z-score = -1.83, R) >droSec1.super_4 5522748 100 + 6179234 UAGGAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCAAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAA-- ..(((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)))........................-- ( -26.60, z-score = -2.82, R) >droYak2.chrX 2117796 94 - 21770863 --------AGCACAGAUAAGAGUUAUACGAAUAAUUGGGGCUCUUAUCUACCCAAAUGCAUAAUCUUUUUGUAUCCACCAUCAUCAUCAGUCGCCCCCAUAA --------.(((((((((((((((...(((....))).)))))))))))......(((((.........)))))...............)).))........ ( -17.60, z-score = -1.74, R) >droAna3.scaffold_13417 716514 80 - 6960332 --------AUCAGCGGAGUGA-UAACAGAGAUCAGCCGCCUUCUAAUCUGUC-AAAUGCCUAAUUUAUUGGCAACGCCAGUGUCCCAUAA------------ --------....((((..(((-(.......)))).)))).............-............(((((((...)))))))........------------ ( -15.20, z-score = -0.06, R) >consensus UA_GAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAA__ .............(((((((((((...(((....))).)))))))))))......(((((.........)))))............................ (-10.82 = -11.62 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:57 2011