| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,087,137 – 6,087,187 |
| Length | 50 |
| Max. P | 0.971612 |
| Location | 6,087,137 – 6,087,187 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 88.20 |
| Shannon entropy | 0.21064 |
| G+C content | 0.47200 |
| Mean single sequence MFE | -8.74 |
| Consensus MFE | -6.32 |
| Energy contribution | -6.32 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6087137 50 + 22422827 UUGCCGACUAACUGCCUUUUUUGACAUUGGAUCCCCGUUAGUCUCUCCCG .....(((((((((.(......).))..((....)))))))))....... ( -8.90, z-score = -2.31, R) >droSim1.chrX 4803461 50 + 17042790 UUGCUGACUAACUGCCUUUUUUGACAUUGGAUCCCCGUUAGUCUUUCCCG .....(((((((((.(......).))..((....)))))))))....... ( -8.60, z-score = -2.43, R) >droSec1.super_4 5497647 50 - 6179234 UUGCUGACUAACUGCCUUUUUUGACAUUGGAUCCCCGUUAGUCUUUCCUG .....(((((((((.(......).))..((....)))))))))....... ( -8.60, z-score = -2.52, R) >droYak2.chrX 2090078 50 + 21770863 UUGCUGACUAACUGCGUCUUUCGGAAUUGGAUCCCCGUUAGUCUUUCCCG .....(((((((..((.....)).....((....)))))))))....... ( -9.90, z-score = -1.10, R) >droEre2.scaffold_4690 15058999 50 + 18748788 CCGCUGACUAACUGCGUUUCUAGAAAUUGUAUCCCCGUUAGUCUUUUCCG .....((((((((((((((....))).)))).....)))))))....... ( -7.70, z-score = -1.87, R) >consensus UUGCUGACUAACUGCCUUUUUUGACAUUGGAUCCCCGUUAGUCUUUCCCG .....(((((((........................)))))))....... ( -6.32 = -6.32 + -0.00)
| Location | 6,087,137 – 6,087,187 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 88.20 |
| Shannon entropy | 0.21064 |
| G+C content | 0.47200 |
| Mean single sequence MFE | -12.76 |
| Consensus MFE | -9.22 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6087137 50 - 22422827 CGGGAGAGACUAACGGGGAUCCAAUGUCAAAAAAGGCAGUUAGUCGGCAA .......(((((((((....))..((((......)))))))))))..... ( -14.00, z-score = -2.96, R) >droSim1.chrX 4803461 50 - 17042790 CGGGAAAGACUAACGGGGAUCCAAUGUCAAAAAAGGCAGUUAGUCAGCAA .......(((((((((....))..((((......)))))))))))..... ( -14.00, z-score = -3.75, R) >droSec1.super_4 5497647 50 + 6179234 CAGGAAAGACUAACGGGGAUCCAAUGUCAAAAAAGGCAGUUAGUCAGCAA .......(((((((((....))..((((......)))))))))))..... ( -14.00, z-score = -4.18, R) >droYak2.chrX 2090078 50 - 21770863 CGGGAAAGACUAACGGGGAUCCAAUUCCGAAAGACGCAGUUAGUCAGCAA .......(((((((((....)).....(....).....)))))))..... ( -12.20, z-score = -1.54, R) >droEre2.scaffold_4690 15058999 50 - 18748788 CGGAAAAGACUAACGGGGAUACAAUUUCUAGAAACGCAGUUAGUCAGCGG .......(((((((.((((......)))).........)))))))..... ( -9.60, z-score = -1.80, R) >consensus CGGGAAAGACUAACGGGGAUCCAAUGUCAAAAAAGGCAGUUAGUCAGCAA .......(((((((((....))..((((......)))))))))))..... ( -9.22 = -10.06 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:55 2011