Locus 13362

Sequence ID dm3.chrX
Location 6,085,694 – 6,085,793
Length 99
Max. P 0.808659
window18395

overview

Window 5

Location 6,085,694 – 6,085,793
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 98.18
Shannon entropy 0.03168
G+C content 0.46061
Mean single sequence MFE -27.08
Consensus MFE -26.72
Energy contribution -26.60
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.76
SVM RNA-class probability 0.808659
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6085694 99 + 22422827
UAUCGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAUCGCGCGUCGGCGUUCGAUGCC
((((((((......(.....).........(((((((((...((....))(((((...........)))))........))))).)))))))))))).. ( -26.60, z-score =  -0.49, R)
>droSim1.chrX 4802011 99 + 17042790
UAUCGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAACGCCCGUCGGCGUUCGAUGCC
((((((((..((((((((..(((..(((.(((((((.((.......)).))))))).))).)))..))).)))))....(((....))))))))))).. ( -28.40, z-score =  -1.82, R)
>droSec1.super_4 5496206 99 - 6179234
UAUUGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAACGCCCGUCGGCGUUCGAUGCC
((((((((..((((((((..(((..(((.(((((((.((.......)).))))))).))).)))..))).)))))....(((....))))))))))).. ( -26.30, z-score =  -1.27, R)
>droYak2.chrX 2088694 99 + 21770863
UAUCGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAUCGUCCGUCGGCGUUCGAUGCC
((((((((..((((((((..(((..(((.(((((((.((.......)).))))))).))).)))..))).)))))....(((....))))))))))).. ( -25.70, z-score =  -1.05, R)
>droEre2.scaffold_4690 15057544 99 + 18748788
UAUCGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAUCGCCCGUCGGCGUUCGAUGCC
((((((((..((((((((..(((..(((.(((((((.((.......)).))))))).))).)))..))).)))))....(((....))))))))))).. ( -28.40, z-score =  -1.84, R)
>consensus
UAUCGAACUAUAUAGAAUUUCAAAACAAAAGUUGCGCGCCCAGGAAGUCCGCGAUUGUUGAUUGUUGUUGCUGUAAAUCGCCCGUCGGCGUUCGAUGCC
((((((((..((((((((..(((..(((.(((((((.((.......)).))))))).))).)))..))).)))))....(((....))))))))))).. (-26.72 = -26.60 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:54 2011