| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,079,326 – 6,079,427 |
| Length | 101 |
| Max. P | 0.505784 |
| Location | 6,079,326 – 6,079,427 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 94.10 |
| Shannon entropy | 0.08103 |
| G+C content | 0.37998 |
| Mean single sequence MFE | -18.04 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.46 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6079326 101 - 22422827 AAAUAAAAAAGAGAAAGCAUAAAACUUUCCAACGGAAGAGGAAUUUUUGGGG-AAGGGUAGAAAGCAAAAGUUCCGACAACAAAUAACCACAAGUGGAUGCC ................((((....(((((....))))).((((((((((...-............))))))))))............(((....))))))). ( -18.56, z-score = -1.43, R) >droSec1.super_4 5489932 101 + 6179234 AAAUAAAAAAGAGAAAGCAUAAAACGUUCCAACGGAAGUGGAAUUUUUGGGG-AAGGGUAGAAAGCAAAAGUUCCGACAACAAAUAACCACAAGUGGAUGCC ................((((.....(((...((....))((((((((((...-............))))))))))))).........(((....))))))). ( -19.16, z-score = -1.39, R) >droEre2.scaffold_4690 15050832 98 - 18748788 ----AAAAAAGAGAAAGUAUAAAAGUUUCCAACGGAAGAGGAAUUUUUGGGGAAAGGGUAGAAAGCAAAAGUUCCGACAACAAAUAACCACAAGUGGAUGCC ----....................((.((((.(....).((((((((((................))))))))))...................)))).)). ( -16.39, z-score = -0.86, R) >consensus AAAUAAAAAAGAGAAAGCAUAAAACUUUCCAACGGAAGAGGAAUUUUUGGGG_AAGGGUAGAAAGCAAAAGUUCCGACAACAAAUAACCACAAGUGGAUGCC ................((((......((((...))))..((((((((((................))))))))))............(((....))))))). (-16.68 = -16.46 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:53 2011