Locus 13360

Sequence ID dm3.chrX
Location 6,074,195 – 6,074,248
Length 53
Max. P 0.626989
window18393

overview

Window 3

Location 6,074,195 – 6,074,248
Length 53
Sequences 6
Columns 53
Reading direction forward
Mean pairwise identity 86.16
Shannon entropy 0.27008
G+C content 0.40233
Mean single sequence MFE -12.30
Consensus MFE -8.45
Energy contribution -8.98
Covariance contribution 0.53
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.28
SVM RNA-class probability 0.626989
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6074195 53 + 22422827
UGUACUCUAAGCAUAAUGUGCAAAUAAUUGAUUGCCUGUUAUGUGGUAUUCCC
.(((((....((((((((.((((........)))).))))))))))))).... ( -11.20, z-score =  -2.00, R)
>droSim1.chrX 4791806 53 + 17042790
UGUACUCCAAGCAUAAUGUGCAAAUAAUUGAUUGCCUGUUAUGCGGUAUUCCC
.(((((....((((((((.((((........)))).))))))))))))).... ( -12.60, z-score =  -2.11, R)
>droSec1.super_4 5484829 53 - 6179234
UGUACUCCAAGCAUAAUGUGCAAAUAAUUGAUUGCCUGUUAUGUGGUAUUCCC
.(((((....((((((((.((((........)))).))))))))))))).... ( -11.20, z-score =  -1.68, R)
>droEre2.scaffold_4690 15045896 53 + 18748788
UGUACUCGAAGCAUAAUGUGCAAAUAAUUGAUUGCCCGUUAUGCGGCACUCCC
.......(..((((((((.((((........)))).))))))))..)...... ( -14.70, z-score =  -2.54, R)
>droYak2.chrX 2077372 53 + 21770863
UAAACUCGAAGCAUAAUGUGCAAAUAAUUGAUUGCCUGUUAUGUGGUGUUCAC
......((..((((((((.((((........)))).))))))))..))..... ( -10.60, z-score =  -1.19, R)
>droAna3.scaffold_13417 676870 51 + 6960332
UGGCCUCUGGCCAUAAUGUGCAAAUAAUUGAUUGCCUCUC--GAGGCAUUUCC
(((((...)))))................((.(((((...--.)))))..)). ( -13.50, z-score =  -1.30, R)
>consensus
UGUACUCCAAGCAUAAUGUGCAAAUAAUUGAUUGCCUGUUAUGUGGUAUUCCC
..........((((((((.((((........)))).))))))))......... ( -8.45 =  -8.98 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:52 2011