| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,064,608 – 6,064,701 |
| Length | 93 |
| Max. P | 0.697789 |
| Location | 6,064,608 – 6,064,701 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 99.46 |
| Shannon entropy | 0.00872 |
| G+C content | 0.54032 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -25.06 |
| Energy contribution | -24.88 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.07 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6064608 93 + 22422827 GAGCUGGGCAGGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUU ..(.((((((............((.((....)).))..(((((((....)......(....)..)))).((....)))).)))))).)..... ( -24.90, z-score = -1.07, R) >droSim1.chrX 4789662 93 + 17042790 GAGCUGGGCAGGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUU ..(.((((((............((.((....)).))..(((((((....)......(....)..)))).((....)))).)))))).)..... ( -24.90, z-score = -1.07, R) >droSec1.super_4 5482697 93 - 6179234 GAGCUGGGCAGGAAAAAAUGAAGUGGCAACUGCGGCAGGCGGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUU ..(.((((((......((((..((.((....)).))..((..(.(....).)..))(....)..)))).(((....))).)))))).)..... ( -25.40, z-score = -1.07, R) >droEre2.scaffold_4690 15043772 93 + 18748788 GAGCUGGGCAGGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUU ..(.((((((............((.((....)).))..(((((((....)......(....)..)))).((....)))).)))))).)..... ( -24.90, z-score = -1.07, R) >consensus GAGCUGGGCAGGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUU ..(.((((((............((.((....)).))..(((((((....)......(....)..)))).((....)))).)))))).)..... (-25.06 = -24.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:51 2011