| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,039,906 – 6,039,996 |
| Length | 90 |
| Max. P | 0.918692 |
| Location | 6,039,906 – 6,039,996 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.29 |
| Shannon entropy | 0.24689 |
| G+C content | 0.55192 |
| Mean single sequence MFE | -29.86 |
| Consensus MFE | -25.82 |
| Energy contribution | -27.06 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.918692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6039906 90 + 22422827 GAUACGUUGCUGCCACCGCCCCCAUCGACGAUCACCGUCAUGGGCGGCUCUUCGUUGGAAUGCAUUUGACUUACUCUCUUGGUGGUGUUG--- ...........((((((((((((((.((((.....))))))))).))).....((..((.....))..))..........))))))....--- ( -32.20, z-score = -2.66, R) >droSim1.chrX_random 1904214 90 + 5698898 GAUACGUUGCUGCCACCGCCCCCAUCGACGAUCACCGUCAUGGGCGGCUCUUCGUUGGAAUGCAUUUGACUUACUCUGUUGGUGGUGGUG--- ........((..(((((((((((((.((((.....))))))))).))).....((..((.....))..))..........)))))..)).--- ( -36.60, z-score = -3.05, R) >droSec1.super_4 5453339 90 - 6179234 GAUACGUUGCUGCCACCGCCCCCAUCGACGAUCACCGUCAUGAGCGGCUCUUCGUUGGAAUGCAUUUGACUUACUCUGUUGGUGGUGGUG--- ........((..(((((((((.(((.((((.....))))))).).))).....((..((.....))..))..........)))))..)).--- ( -29.70, z-score = -1.47, R) >droYak2.chrX 2049961 85 + 21770863 GAUACGUUGCUGCCACCGCCCCCAUCGACGAUCACCGUCAUGGGCGGCUCUUCGUUGGAAUGCAUUUGACUUACUCUGUGGGUGC-------- ........((..((((.((((((((.((((.....))))))))).))).....((..((.....))..)).......))))..))-------- ( -27.30, z-score = -0.91, R) >droWil1.scaffold_181150 2293822 93 - 4952429 GCCCCGCUUGUGCCAUCGCCCCCAUCGACAAUCACUGUCAUGGGUGGCUCUUCGUUGGAAUGCAUUUGGUUUAAUUUCUUUGAGUUGCUUCUC ...(((..(((.(((..((((((((.((((.....))))))))).))).......)))...)))..)))............(((......))) ( -23.50, z-score = -0.80, R) >consensus GAUACGUUGCUGCCACCGCCCCCAUCGACGAUCACCGUCAUGGGCGGCUCUUCGUUGGAAUGCAUUUGACUUACUCUGUUGGUGGUGGUG___ ........(((((((((((((((((.((((.....))))))))).))).....((..((.....))..))..........))))))))).... (-25.82 = -27.06 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:48 2011