| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,023,272 – 6,023,427 |
| Length | 155 |
| Max. P | 0.874130 |
| Location | 6,023,272 – 6,023,427 |
|---|---|
| Length | 155 |
| Sequences | 3 |
| Columns | 155 |
| Reading direction | forward |
| Mean pairwise identity | 62.03 |
| Shannon entropy | 0.52557 |
| G+C content | 0.29194 |
| Mean single sequence MFE | -26.91 |
| Consensus MFE | -9.41 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6023272 155 + 22422827 UAUAAUUGGAAUAUCUCUUCCAACUACGUUUAAAUUUUGGCUCUAAAAACUACAUUAUUUUUUACUCAAAAAUUGUAUACCAAAAAUACGGAUUUAUUUUGACCAAGUUUUAUACAAAAAAUCUCGUACAAUGUUCACCACACGCCGAAAUUAAG .....((((((......)))))).........(((((((((.........((((..((((((.....)))))))))).........(((((((((..((((.............))))))))).))))...............)))))))))... ( -22.02, z-score = -1.96, R) >droSec1.super_4 5436916 143 - 6179234 UACAAUUAGAAUAUCUCUUACAACUGCGUUUUAAUUUUGGCUCUAUAGGCGACAACGCCGUUUGC-CAAAUAUGAUCCUUAUAUGGAUUGGAAU-AUUUUUCCCAAAAAUAUUUUUACCAAAAAUGCGAGAUAUUUAAAAUUUAU---------- ........(((((((((........(((((((...((((((......((((....))))....))-))))...(((((......)))))(((((-(((((.....)))))))))).....)))))))))))))))).........---------- ( -35.10, z-score = -4.41, R) >droSim1.chrX 4745369 128 + 17042790 UACAAUUAGAAUAUCACUUUCAACUGCGUUUAAAUUUUGGCUCUAUAGGCGACAACGUCGUUUGC-AAAAUAUGAUCCAUAUAUGGAUUGGAAU-AUUUUUCCCAAAAAU---------------GCGAGAUAUUUGAAAUUUAU---------- ........(((.......))).........(((((((..((((...(((((((...)))))))((-(......((((((....))))))((((.-....))))......)---------------)))))....)..))))))).---------- ( -23.60, z-score = -0.79, R) >consensus UACAAUUAGAAUAUCUCUUACAACUGCGUUUAAAUUUUGGCUCUAUAGGCGACAACGUCGUUUGC_CAAAUAUGAUCCAUAUAUGGAUUGGAAU_AUUUUUCCCAAAAAU__U___A__AA____GCGAGAUAUUUAAAAUUUAU__________ ........(((((((..(((.(((...))).)))((((((.......((((....)))).............((((((......))))))............)))))).....................)))))))................... ( -9.41 = -10.20 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:46 2011