| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,021,615 – 6,021,669 |
| Length | 54 |
| Max. P | 0.701551 |
| Location | 6,021,615 – 6,021,669 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.56277 |
| G+C content | 0.45024 |
| Mean single sequence MFE | -10.30 |
| Consensus MFE | -5.82 |
| Energy contribution | -6.58 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6021615 54 - 22422827 GAUUUGAAAGUGCAUCCGCAUUGCUACUACGUAAUGAAUCCCCUCAUGCGCACA- .........((((((...((((((......)))))).........))))))...- ( -10.70, z-score = -1.43, R) >droEre2.scaffold_4690 15000897 54 - 18748788 UAUCCGAAAGUGCAUCCACAUUGCUACCAUGUAUUGAGUUCCCUAAUGUGCACA- .........((((((...((.(((......))).))((....))...)))))).- ( -9.00, z-score = -0.90, R) >droSec1.super_4 5435274 54 + 6179234 GAUUUGAAAGUGCAUCCGCAUUGCUACUAUGUAAUGAGUCCCCUCAUGCGCACA- .........((((((....(((((......)))))(((....)))))))))...- ( -11.90, z-score = -1.35, R) >droSim1.chrX 4743733 54 - 17042790 GAUUUGAAAGUGCAUCCGCAUUGCUACUAUGUAAUGAGUCCCCUCAUGCGCACA- .........((((((....(((((......)))))(((....)))))))))...- ( -11.90, z-score = -1.35, R) >droWil1.scaffold_181150 2271121 55 + 4952429 AAUGAGUAGGCAAAUGCAAAUGACUAAUGCCAAGAGAAGCGAUGGGCAUGCUAGA ....((((((((...((....).)...)))).......((.....)).))))... ( -8.00, z-score = 0.66, R) >consensus GAUUUGAAAGUGCAUCCGCAUUGCUACUAUGUAAUGAGUCCCCUCAUGCGCACA_ .........((((((...((((((......)))))).........)))))).... ( -5.82 = -6.58 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:45 2011