| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,004,043 – 6,004,175 |
| Length | 132 |
| Max. P | 0.993801 |
| Location | 6,004,043 – 6,004,175 |
|---|---|
| Length | 132 |
| Sequences | 5 |
| Columns | 133 |
| Reading direction | forward |
| Mean pairwise identity | 93.05 |
| Shannon entropy | 0.11979 |
| G+C content | 0.57789 |
| Mean single sequence MFE | -57.12 |
| Consensus MFE | -47.88 |
| Energy contribution | -48.12 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6004043 132 + 22422827 GGUUGUGGUUGGUGCAUCGGCUAUACUUGUUUAUCGGCGGCGUCUCUCGCGAGACACUGCUUGCUUCGCUGGCUUCAGCCAGCGGACGCCAGGUGGCGCCACACAUGUAGUAAAAGCAUG-AAAACCAUGUAG ....(((((((((((((((((..............(((((.(((((....))))).)))))...(((((((((....))))))))).))).))).)))))...(((((.......)))))-..)))))).... ( -55.80, z-score = -2.85, R) >droEre2.scaffold_4690 14983145 132 + 18748788 GGUUGUGGUUGGUGCAUCGGCUACACUGCUUUAUCGGCGGCGCCUCUUGCGAGGCACUGCUUGCUUCGCCGGCUGCCGCCAGCGGACGCCAGGCGGCGCCACACACGAGGUAAAAGCAUG-AAAACCAUAUAG ((((((((((((....))))))))..((((((...(((((.(((((....))))).)))))(((((((..(((.((((((.((....))..))))))))).....)))))))))))))..-..))))...... ( -60.00, z-score = -2.32, R) >droYak2.chrX 2013941 133 + 21770863 GGUUGUGGUUGGUGCAUCGGCUACACUGCUUUAUCGGCGGCGCCUCUUCCGAGGCACUGCUUGCUGCGCCGGCUUCAGCCAACGGACGCCAGGCGGCGCCACACAUGUAGUAAAAGCAUGUAAGACCAUGUAG (((((.((((((((((.((((......))).....(((((.(((((....))))).))))).).)))))))))).)))))...((.((((....))))))..((((((.......))))))............ ( -57.60, z-score = -2.01, R) >droSec1.super_4 5417517 132 - 6179234 GGUUGUGGUUGGUGCAUCGGCUACACUUGUUUAUCGGCGGCGCCUCUCGCGAGACACUGCUUGCUUCGCUGGCUUCAGCCAGCGGACGCCAGGUGGCGCCACACAUGUAGUAAAAGCAUG-AAAAUCAUGUAG ....((((((.((((....((((((..(((.....((((.(((((..((((((......)))))(((((((((....))))))))).)..))))).)))))))..))))))....)))).-..)))))).... ( -54.80, z-score = -2.41, R) >droSim1.chrX_random 1893307 132 + 5698898 GGUUGUGGUUGGUGCAUCGGCUACACUUGUUUAUCGGCGGCGCCUCUCGCGAGACACUGCUUGCUUCGCUGGCUUCAGCCAGCGGACGCCAGGUGGCGCCACACAUGUAGUAAAAGCAUG-AAAACCAUGUAG ....((((((.((((....((((((..(((.....((((.(((((..((((((......)))))(((((((((....))))))))).)..))))).)))))))..))))))....)))).-..)))))).... ( -57.40, z-score = -2.91, R) >consensus GGUUGUGGUUGGUGCAUCGGCUACACUUGUUUAUCGGCGGCGCCUCUCGCGAGACACUGCUUGCUUCGCUGGCUUCAGCCAGCGGACGCCAGGUGGCGCCACACAUGUAGUAAAAGCAUG_AAAACCAUGUAG ...(((((((.((((....(((((...........(((((.(((((....))))).)))))......((((((....))))))((.((((....))))))......)))))....))))....)))))))... (-47.88 = -48.12 + 0.24)
| Location | 6,004,043 – 6,004,175 |
|---|---|
| Length | 132 |
| Sequences | 5 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 93.05 |
| Shannon entropy | 0.11979 |
| G+C content | 0.57789 |
| Mean single sequence MFE | -53.78 |
| Consensus MFE | -50.04 |
| Energy contribution | -50.04 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.993801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6004043 132 - 22422827 CUACAUGGUUUU-CAUGCUUUUACUACAUGUGUGGCGCCACCUGGCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGACGCCGCCGAUAAACAAGUAUAGCCGAUGCACCAACCACAACC .....((((..(-(..(((..((((...(((..((((((....))))))(((((((....)))))))..))).((.(((((((....))))))).)).........)))).))).))...))))......... ( -51.20, z-score = -3.59, R) >droEre2.scaffold_4690 14983145 132 - 18748788 CUAUAUGGUUUU-CAUGCUUUUACCUCGUGUGUGGCGCCGCCUGGCGUCCGCUGGCGGCAGCCGGCGAAGCAAGCAGUGCCUCGCAAGAGGCGCCGCCGAUAAAGCAGUGUAGCCGAUGCACCAACCACAACC .....(((((..-..((((((....((......(((((((((.(((....))))))))).)))((((..(....).(((((((....))))))))))))).))))))(((((.....))))).)))))..... ( -58.80, z-score = -2.57, R) >droYak2.chrX 2013941 133 - 21770863 CUACAUGGUCUUACAUGCUUUUACUACAUGUGUGGCGCCGCCUGGCGUCCGUUGGCUGAAGCCGGCGCAGCAAGCAGUGCCUCGGAAGAGGCGCCGCCGAUAAAGCAGUGUAGCCGAUGCACCAACCACAACC ...((((((..(((.((((((.......(((..((((((....))))))(((((((....)))))))..))).((.(((((((....))))))).))....)))))))))..))).))).............. ( -52.60, z-score = -1.42, R) >droSec1.super_4 5417517 132 + 6179234 CUACAUGAUUUU-CAUGCUUUUACUACAUGUGUGGCGCCACCUGGCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGCCGCCGAUAAACAAGUGUAGCCGAUGCACCAACCACAACC ............-..(((.((..((((((.(((((((((....))))))(((((((....)))))))......((.(((((((....))))))).))......))).))))))..)).)))............ ( -51.10, z-score = -3.13, R) >droSim1.chrX_random 1893307 132 - 5698898 CUACAUGGUUUU-CAUGCUUUUACUACAUGUGUGGCGCCACCUGGCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGCCGCCGAUAAACAAGUGUAGCCGAUGCACCAACCACAACC .....(((((..-..(((.((..((((((.(((((((((....))))))(((((((....)))))))......((.(((((((....))))))).))......))).))))))..)).)))..)))))..... ( -55.20, z-score = -3.67, R) >consensus CUACAUGGUUUU_CAUGCUUUUACUACAUGUGUGGCGCCACCUGGCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGCCGCCGAUAAACAAGUGUAGCCGAUGCACCAACCACAACC .....(((((.....(((((.............((((((....))))))(((((((....)))))))))))).((.(((((((....))))))).))..........(((((.....))))).)))))..... (-50.04 = -50.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:43 2011