| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,989,310 – 5,989,502 |
| Length | 192 |
| Max. P | 0.624462 |
| Location | 5,989,310 – 5,989,401 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 73.05 |
| Shannon entropy | 0.36402 |
| G+C content | 0.39716 |
| Mean single sequence MFE | -23.06 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5989310 91 - 22422827 UGUAACCACAAGCCCAGCUCAACCAGUCUCUUCACAUGGCAACAGAUGGUAGAGAUUGCUUUUUUAUUUGGAAGAGAUAUUC---CCCUAGAAG--- .......................(((((((((((..((....))..))).))))))))...(((((...((((......)))---)..))))).--- ( -18.90, z-score = -0.68, R) >droSec1.super_4 5402758 87 + 6179234 ------CAUAAACAAAUUUCAUCCAGUGUCUUCACAUGGCAACAGAUGGAAAAGAUUGAUUUUUCAAUUGGUGAAGACAUCC----AUUUGGGGUAA ------.........((..((....((((((((((.((....))..(((((((......)))))))....))))))))))..----...))..)).. ( -24.70, z-score = -2.58, R) >droSim1.chrX 4719618 91 - 17042790 ------CAUAAACCCAGUUCAACCAGUGUCUUCACAUGGCAACGGAUGGAAAAGAUUGAUUUUUCAAUUGGUGAAGAUAUCCACCUAUUUGGGGUCA ------......(((((........((((((((((.((....))..(((((((......)))))))....))))))))))........))))).... ( -25.59, z-score = -1.48, R) >consensus ______CAUAAACCCAGUUCAACCAGUGUCUUCACAUGGCAACAGAUGGAAAAGAUUGAUUUUUCAAUUGGUGAAGAUAUCC____AUUUGGGGU_A .........................((((((((((.((....))..(((((((......)))))))....))))))))))................. (-14.52 = -14.87 + 0.34)
| Location | 5,989,401 – 5,989,502 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.93 |
| Shannon entropy | 0.26367 |
| G+C content | 0.33880 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -11.47 |
| Energy contribution | -13.80 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5989401 101 - 22422827 CGCCGAUUAAAGUAAUCAUUGGCUAAGAAGGCCCUUGAAAAUGUAAUCUUAAACCAUUCUUAUUUGAACCAUAAAUCCAUUAUUUAAAGCUUUGGUUGGAU ..(((((((((((..(((..((((.....))))..)))..................(((......)))....................))))))))))).. ( -20.50, z-score = -1.44, R) >droSec1.super_4 5402845 87 + 6179234 CGCCGAUUAAAGUAAUCAUUGGCUAAGAAGGCCCUUGAAAAGUUAAUCUAAAUACAUUCUUAAUCGUAAUGUAUGUCCCAU-----AAGCUU--------- .((.((((((.....(((..((((.....))))..)))....))))))...((((((((......).))))))).......-----..))..--------- ( -17.20, z-score = -2.19, R) >droSim1.chrX 4719709 87 - 17042790 CGCCGAUUAAAGUAAUCAUUGGCUAAGAAGGCCCUUGAAAAGUUAAUCUAAAUACAUUCUUAAUCGUAAUGUAUGUCCCAU-----AAGCUU--------- .((.((((((.....(((..((((.....))))..)))....))))))...((((((((......).))))))).......-----..))..--------- ( -17.20, z-score = -2.19, R) >consensus CGCCGAUUAAAGUAAUCAUUGGCUAAGAAGGCCCUUGAAAAGUUAAUCUAAAUACAUUCUUAAUCGUAAUGUAUGUCCCAU_____AAGCUU_________ .((.((((((.....(((..((((.....))))..)))....))))))...((((((((......).)))))))..............))........... (-11.47 = -13.80 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:41 2011