| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,976,450 – 5,976,529 |
| Length | 79 |
| Max. P | 0.818577 |
| Location | 5,976,450 – 5,976,529 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 77.23 |
| Shannon entropy | 0.38428 |
| G+C content | 0.49701 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -16.78 |
| Energy contribution | -18.32 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5976450 79 - 22422827 GCCGGUCGAGAGGGCCACAUAUGUAUGUAUAUUACG-------UGUAGUAUACUUUACCCGAGUUAGCGGAACAAAGGCCAUCUCU .......((((.((((......(((.((((((((..-------..))))))))..)))(((......)))......)))).)))). ( -25.00, z-score = -2.22, R) >droEre2.scaffold_4690 14955369 66 - 18748788 GCCGGUCGAGAGGGCCAC--------AUAUACUAC------------GUAUAUUCCACCCGAGUCAGCGGAACAAAGGCCAUCUCU .......((((.((((..--------((((((...------------)))))).....(((......)))......)))).)))). ( -18.80, z-score = -1.62, R) >droYak2.chrX 1985850 61 - 21770863 GCCGGUCGAGUGGGCCACAUAC-------------------------AUAUAUUCUACCCGAGUCAGCGGAACAAAGGCCAUCUCU (((((((.....))))......-------------------------...........(((......)))......)))....... ( -13.10, z-score = 0.15, R) >droSec1.super_4 5390201 86 + 6179234 GCCGGUCGAGAGGGCCACCUAUGUAUGUAUAUUACGUAUAGUAUAUAGUAUACUCUACCCGAGUCAGCGGAACAAAGGCCAUCUCU .......((((.((((..((((((((.(((((...)))))))))))))..........(((......)))......)))).)))). ( -23.80, z-score = -1.03, R) >droSim1.chrX 4704916 86 - 17042790 GCCGGUCGAGAGGGCCACAUAUGUAUGUAUAUUACGUAUAGUGUAUAGUAUACUCUACCCGAGUCAGCGGAACAAAGGCCAUCUCU .......((((.((((((((.((((((((...))))))))))))...((..((((.....))))..))........)))).)))). ( -25.20, z-score = -1.46, R) >consensus GCCGGUCGAGAGGGCCACAUAUGUAUGUAUAUUACG_______U_UAGUAUACUCUACCCGAGUCAGCGGAACAAAGGCCAUCUCU .......((((.((((..........((((((((...........)))))))).....(((......)))......)))).)))). (-16.78 = -18.32 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:40 2011