| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,373,339 – 10,373,401 |
| Length | 62 |
| Max. P | 0.702754 |
| Location | 10,373,339 – 10,373,401 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 85.02 |
| Shannon entropy | 0.26477 |
| G+C content | 0.33014 |
| Mean single sequence MFE | -9.46 |
| Consensus MFE | -8.54 |
| Energy contribution | -8.94 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10373339 62 - 23011544 AAUGUUUGUAUCCCAAAUAGAGAUUUGGCGGAUAAACGAAAACUUUAAAGAAGUAAUCCUAA ..(((((((.((((((((....)))))).)))))))))...(((((...)))))........ ( -11.00, z-score = -1.74, R) >droEre2.scaffold_4929 10982025 61 - 26641161 -AUGUUUGUGUCCCAAAUAGAGAUUUGGCGGAUAAACGAAUACUUAAAAGACUUAGGAUUAG -.(((((((.(.((((((....)))))).).)))))))....(((((.....)))))..... ( -12.40, z-score = -1.95, R) >droYak2.chr2L 13053242 61 - 22324452 -AUGUUUGUAUCCCAAAUAGAAAUUUGGCGGAUAAACGGAUAUUUUAAACACUUAACAAUAA -.(((((((.((((((((....)))))).)))))))))........................ ( -10.10, z-score = -1.48, R) >droSec1.super_3 5801194 61 - 7220098 -AUGCUUGUAUCCCAAAUAGAGAUUUGGCGGAUAAACGAAAACUUUAAAGAAGUGAACCUAC -..((((.(...((((((....))))))((......))..........).))))........ ( -6.90, z-score = -0.10, R) >droSim1.chr2L 10162912 61 - 22036055 -AUGCUUGUAUCCCAAAUAGAGAUUUGGCGGAUAAACGAAAACUUUAAAGAAGUGAACCUAC -..((((.(...((((((....))))))((......))..........).))))........ ( -6.90, z-score = -0.10, R) >consensus _AUGUUUGUAUCCCAAAUAGAGAUUUGGCGGAUAAACGAAAACUUUAAAGAAGUAAACCUAA ..(((((((.((((((((....)))))).)))))))))........................ ( -8.54 = -8.94 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:59 2011