| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,975,978 – 5,976,070 |
| Length | 92 |
| Max. P | 0.659998 |
| Location | 5,975,978 – 5,976,070 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Shannon entropy | 0.38331 |
| G+C content | 0.33677 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -10.96 |
| Energy contribution | -11.44 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5975978 92 - 22422827 -CCGGAUUUUUUGUUGCAAAUGUGUAUAAUAGGUAUAUGCA-----------AUUGCAGCCACCUAAUUACAGUUAAUUGGGAAUAUUCAAGCAUUAAAUUUAC -..((((((..((((((((.((((((((.....))))))))-----------.)))).....((((((((....))))))))........))))..)))))).. ( -22.80, z-score = -2.25, R) >droEre2.scaffold_4690 14954914 87 - 18748788 ACCGGAUUUUCCC------AUUUAUUAGUUAUACAUGUAUA-----------CUUGCAGCCACCUAAUUAUCGUUAAUUGGGCAUAUGCAAGCAUUGAAUUUUC ...(((..(((.(------((.(((.....))).)))....-----------((((((....((((((((....))))))))....))))))....)))..))) ( -17.70, z-score = -1.71, R) >droYak2.chrX 1985351 104 - 21770863 UCCGGAUUUUUUCUUGGAAAUUAGUAUUUUAGGUACAUAUGUGCGUACAUACAUUACAGCUACCUAAUUAUAGUUAAUUGGGAAUAUGCAAGCAUUGAAUUCUC ...((((((..(((((.(.(((.((((..((.((((....)))).)).))))..........((((((((....))))))))))).).)))).)..)))))).. ( -22.50, z-score = -1.73, R) >droSec1.super_4 5389723 92 + 6179234 -CCGGAUUUCUUGUUGCAAGUUUGUAUAUUAGGUAAAUGCA-----------AUUGCAGCCACCUAAUUACAGUUAAUUGGGAAUAUGCAAGCGUUGAAUUUAC -...............((((((((((((((.(((...(((.-----------...)))))).((((((((....))))))))))))))))))).)))....... ( -24.60, z-score = -2.26, R) >droSim1.chrX 4704441 92 - 17042790 -CCGGAUUUUUUGUUGCAAGUUUGUAUAUUAGGUAAAUGCA-----------AUUGCAGCCACCUAAUUACAGUUAAUUGGGAAUAUGCAAGCGUUGAAUUUAC -...............((((((((((((((.(((...(((.-----------...)))))).((((((((....))))))))))))))))))).)))....... ( -24.60, z-score = -2.39, R) >consensus _CCGGAUUUUUUGUUGCAAAUUUGUAUAUUAGGUAAAUGCA___________AUUGCAGCCACCUAAUUACAGUUAAUUGGGAAUAUGCAAGCAUUGAAUUUAC ...((((((..(((.........((((.........)))).............(((((....((((((((....))))))))....))))))))..)))))).. (-10.96 = -11.44 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:39 2011