| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,972,570 – 5,972,682 |
| Length | 112 |
| Max. P | 0.654916 |
| Location | 5,972,570 – 5,972,682 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.92 |
| Shannon entropy | 0.60387 |
| G+C content | 0.36769 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -7.81 |
| Energy contribution | -9.73 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5972570 112 + 22422827 AGCAGGUGAUUUUGUAUCUAAACA-----CAAUAUUUACCAAUGGGUUUUAGCACGGCUUAAUCGUGAAUGUAAACAAGAUUACCCAUA-AGCCGUGCACCAAUUGC--UUAAUUGGUAG ....(((((..((((........)-----)))...)))))...........((((((((((...((((.((....))...))))...))-))))))))(((((((..--..))))))).. ( -32.00, z-score = -3.01, R) >droSim1.chrX 4696862 112 + 17042790 AGCAGGUGAUUUUGUAUUUAAAGA-----CAAUAUUUACCAAUGGGUUUUAGCACGGUUUAAUCGUGAAUGUAAACAAGAUUACCCAUA-AACCGUGCACCAAUAGC--UGAAUUGGUGG ....(((((..((((........)-----)))...)))))...........((((((((((...((((.((....))...))))...))-))))))))((((((...--...)))))).. ( -29.50, z-score = -2.23, R) >droSec1.super_4 5385230 112 - 6179234 AGCAGGUGAUUUUGUAUUUAAAGA-----CAAUAUUUACCAAUGGGUUUUAGCACGGUUUUAUCGUGAAUGUAAACAAGAUUACCCAUA-AACCGUGCACCUAUAGC--UGAAUUGGUAG (((.(((((..((((........)-----)))...))))).((((((....(((((((((....((((.((....))...))))....)-)))))))))))))).))--).......... ( -30.60, z-score = -2.94, R) >droYak2.chrX 1982099 116 + 21770863 ---AGGUGAUGUUGAAUCGAAAGAAAAGACAAUAUUUACCAAUGGGUUUUAGCACGACUUAAUCGUAAGUGUAAGCAAAAUUACCCAUA-ACUCGUGCACCAAUAGCACUGAAUUGGUGG ---.(((((((((...((....))...))))....))))).(((((((((.((((.(((((....)))))))..)).)))..)))))).-.......(((((((........))))))). ( -29.70, z-score = -2.41, R) >droEre2.scaffold_4690 14951514 99 + 18748788 ---AGGUGAUUUUGAAUCGAAAGA-----CAAUAUUUGCCAAUGGGUUUAGGCUCAGCUUAAGC---------AACA-GAUUAACCAUA-AAUCGUGCGCCACCAGC--UAGAUUGGUGG ---.((..(..(((..((....))-----)))...)..))..(((((....)))))......((---------(...-((((.......-)))).))).(((((((.--....))))))) ( -25.80, z-score = -1.33, R) >droAna3.scaffold_13417 559251 92 + 6960332 -----------------UGGUGGA-----AGUCAUUAAUCAAGGGCUAUCAUUUAAGAGCUAUCAUUAA---GAAAGAAAUAACUUUUAUAUUCCUCCACCCAUUAU--AGCAUUUUUA- -----------------.((((((-----.....(((((....((((..........))))...)))))---(((((......))))).......))))))......--..........- ( -14.80, z-score = -0.47, R) >consensus ___AGGUGAUUUUGUAUCGAAAGA_____CAAUAUUUACCAAUGGGUUUUAGCACGGCUUAAUCGUGAAUGUAAACAAGAUUACCCAUA_AACCGUGCACCAAUAGC__UGAAUUGGUAG ....................................(((((((.(((....((((((((.....((((............))))......)))))))))))...........))))))). ( -7.81 = -9.73 + 1.92)
| Location | 5,972,570 – 5,972,682 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.92 |
| Shannon entropy | 0.60387 |
| G+C content | 0.36769 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -10.37 |
| Energy contribution | -10.08 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.69 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5972570 112 - 22422827 CUACCAAUUAA--GCAAUUGGUGCACGGCU-UAUGGGUAAUCUUGUUUACAUUCACGAUUAAGCCGUGCUAAAACCCAUUGGUAAAUAUUG-----UGUUUAGAUACAAAAUCACCUGCU ..(((((((..--..)))))))((((((((-((((.((((......))))...))....))))))))))...........(((.....(((-----(((....))))))....))).... ( -28.80, z-score = -2.10, R) >droSim1.chrX 4696862 112 - 17042790 CCACCAAUUCA--GCUAUUGGUGCACGGUU-UAUGGGUAAUCUUGUUUACAUUCACGAUUAAACCGUGCUAAAACCCAUUGGUAAAUAUUG-----UCUUUAAAUACAAAAUCACCUGCU ..((((((...--...))))))((((((((-((((.((((......))))...))....))))))))))...........(((.....(((-----(........))))....))).... ( -23.40, z-score = -1.38, R) >droSec1.super_4 5385230 112 + 6179234 CUACCAAUUCA--GCUAUAGGUGCACGGUU-UAUGGGUAAUCUUGUUUACAUUCACGAUAAAACCGUGCUAAAACCCAUUGGUAAAUAUUG-----UCUUUAAAUACAAAAUCACCUGCU ..........(--((...((((((((((((-(((.(((((......)))).....).)).)))))))))....(((....)))........-----.................))))))) ( -20.60, z-score = -0.66, R) >droYak2.chrX 1982099 116 - 21770863 CCACCAAUUCAGUGCUAUUGGUGCACGAGU-UAUGGGUAAUUUUGCUUACACUUACGAUUAAGUCGUGCUAAAACCCAUUGGUAAAUAUUGUCUUUUCUUUCGAUUCAACAUCACCU--- ..((((((((.((((.......))))))))-)((((((..(((.((....(((((....)))))...)).))))))))).)))..................................--- ( -21.80, z-score = -0.49, R) >droEre2.scaffold_4690 14951514 99 - 18748788 CCACCAAUCUA--GCUGGUGGCGCACGAUU-UAUGGUUAAUC-UGUU---------GCUUAAGCUGAGCCUAAACCCAUUGGCAAAUAUUG-----UCUUUCGAUUCAAAAUCACCU--- .....((((((--(((...((((((.((((-.......))))-)).)---------)))..))))).(((..........)))........-----......))))...........--- ( -17.70, z-score = 0.57, R) >droAna3.scaffold_13417 559251 92 - 6960332 -UAAAAAUGCU--AUAAUGGGUGGAGGAAUAUAAAAGUUAUUUCUUUC---UUAAUGAUAGCUCUUAAAUGAUAGCCCUUGAUUAAUGACU-----UCCACCA----------------- -..........--......((((((((....(((.(((((((......---.....))))))).)))..((((........))))....))-----)))))).----------------- ( -17.90, z-score = -1.16, R) >consensus CCACCAAUUCA__GCUAUUGGUGCACGAUU_UAUGGGUAAUCUUGUUUACAUUCACGAUUAAGCCGUGCUAAAACCCAUUGGUAAAUAUUG_____UCUUUAAAUACAAAAUCACCU___ ....((((.....((((.(((.((((((((.......(((((.((........)).)))))))))))))......))).))))....))))............................. (-10.37 = -10.08 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:38 2011