| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,948,100 – 5,948,194 |
| Length | 94 |
| Max. P | 0.976549 |
| Location | 5,948,100 – 5,948,194 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 97.16 |
| Shannon entropy | 0.04516 |
| G+C content | 0.29787 |
| Mean single sequence MFE | -19.15 |
| Consensus MFE | -18.71 |
| Energy contribution | -18.77 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5948100 94 - 22422827 UUUCCCAUUUGACUUUGUUCAUUUACCUUAUGAAUAUGACAAAAUUAAGCUGACAAUAGGUAGCUGAUAUGCUGAUAUUAUUGUUGUUUUUUUU .......((((....(((((((.......)))))))...))))...((((.((((((((.((((......))))...))))))))))))..... ( -17.70, z-score = -2.09, R) >droEre2.scaffold_4690 3283190 94 - 18748788 UUUCCCAUUUGACUUUGUUCAUUUACCUUAUGAAUAUGACAAAAUGAAGCUGACAAUGGGUAGCUGAUAUGCUGAUAUUAUUGUUGUUUUCUUC .....(((((.....(((((((.......))))))).....)))))((((.((((((((.((((......))))...))))))))))))..... ( -20.00, z-score = -2.17, R) >droSec1.super_4 5362215 94 + 6179234 UUUCCCAUUUAACUUUGUUCAUUUACCUUAUGAAUAUGACAAAAUGAAGCUGACAAUGGGUAGCUGAUAUGCUGAUAUUAUUGUUGUUUUUUUU .....(((((.....(((((((.......))))))).....)))))((((.((((((((.((((......))))...))))))))))))..... ( -18.90, z-score = -2.13, R) >droSim1.chrX 4673225 94 - 17042790 UUUCCCAUUUGACUUUGUUCAUUUACCUUAUGAAUAUGACAAAAUGAAGCUGACAAUGGGUAGCUGAUAUGCUGAUAUUAUUGUUGUUUUUUUC .....(((((.....(((((((.......))))))).....)))))((((.((((((((.((((......))))...))))))))))))..... ( -20.00, z-score = -2.30, R) >consensus UUUCCCAUUUGACUUUGUUCAUUUACCUUAUGAAUAUGACAAAAUGAAGCUGACAAUGGGUAGCUGAUAUGCUGAUAUUAUUGUUGUUUUUUUC .....(((((.....(((((((.......))))))).....)))))((((.((((((((.((((......))))...))))))))))))..... (-18.71 = -18.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:30 2011