| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,935,177 – 5,935,270 |
| Length | 93 |
| Max. P | 0.591711 |
| Location | 5,935,177 – 5,935,270 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 64.87 |
| Shannon entropy | 0.57930 |
| G+C content | 0.34719 |
| Mean single sequence MFE | -14.95 |
| Consensus MFE | -6.16 |
| Energy contribution | -6.72 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5935177 93 - 22422827 UUACCUACUUUCCUGCAACACCACGCAGGAAAACACAAUAAGAGGCUACAAAACCGAGCUUUCGAAGAAAUCUAAAUAAUAUUCUGUUAUCCC .........(((((((........)))))))((((.((((.((((((.(......)))))))...((....))......)))).))))..... ( -17.10, z-score = -2.97, R) >droSim1.chrX 4663026 93 - 17042790 UUGCCUAUUUUCCUGCAACGCCACGCAGGAAAAAACAAAAAGAGGCUACAAAACUGAACUUUCGAAGCAAGAAAAAUAAUAUUCUGUUAUCUC ..((((.(((((((((........))))))))).........)))).................((((((.(((........))))))).)).. ( -18.60, z-score = -2.25, R) >droSec1.super_4 5349356 93 + 6179234 UUGCCUAUUUCCCUGCAACGCCACGCAGGAAAAAACAAAAAGAGGCUACAAAACUGAACUUUCGAAGCAAGAAAAAUAAUAUUCUGUUAUCUC ..((((.(((.(((((........))))).))).........)))).................((((((.(((........))))))).)).. ( -14.20, z-score = -0.69, R) >droMoj3.scaffold_6473 94358 77 - 16943266 ----------CUAAGUAUUGCUAAAUAAAUAAAUAUAUGAACAGCCUAUGAAAUUUGACUUU-AAGUUAGUUAUUAUACUGCUUGGGU----- ----------(((((((..(((..(((........)))....))).(((((...(((((...-..)))))...))))).)))))))..----- ( -9.90, z-score = 0.26, R) >consensus UUGCCUAUUUCCCUGCAACGCCACGCAGGAAAAAACAAAAAGAGGCUACAAAACUGAACUUUCGAAGCAAGAAAAAUAAUAUUCUGUUAUCUC ........((((((((........))))))))............................................................. ( -6.16 = -6.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:27 2011