| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,372,019 – 10,372,120 |
| Length | 101 |
| Max. P | 0.706747 |
| Location | 10,372,019 – 10,372,120 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 68.97 |
| Shannon entropy | 0.63794 |
| G+C content | 0.59191 |
| Mean single sequence MFE | -38.03 |
| Consensus MFE | -12.63 |
| Energy contribution | -14.01 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10372019 101 + 23011544 CUUGGAGCGAUAGUUGUACGGCAUAUUGGCGUACUGCGAUUGCAUCGCGGAUGCAGAUGUGCUUGC-AGACGAUGCCACAGCGGCAGCUGGCGUCGGCAGAU ......((.....(((((.((((((((.((((.(((((((...))))))))))).)))))))))))-)).((((((((..((....)))))))))))).... ( -43.50, z-score = -2.14, R) >droEre2.scaffold_4929 10980717 101 + 26641161 CUUGGAGCGAUAGUUGUACGGCAUGUUAGCGUACUGCGAUUGCAUCGCGGAUGCGGAUGUGGUUGC-AGAGGAGGAUGCAGAGGCGGCUGGAGUGGCCAGAU .((((.((..(((((((...((((.((..(...(((((((..((((.((....))))))..)))))-)).).)).))))....)))))))..))..)))).. ( -40.00, z-score = -3.31, R) >droYak2.chr2L 13051937 98 + 22324452 CUUGGAGCGAUAGUUGUACGGCAUGUUGGCGUACUGCGAUGGCAGCGCGGAUGCGGAUGUGGUUGC-AGAGG---CGGCACCGACGGCUGGAGUGGGCAGAU .(((..((..(((((((.(((..(((((.(...(((((((.(((.(((....)))..))).)))))-)).).---)))))))))))))))..))...))).. ( -38.00, z-score = -1.77, R) >droSec1.super_3 5799909 101 + 7220098 UUUGGAGCGAUAGUUGUACGGCAUAUUGGCGUACUGCGAUUGCAUCGCGGAUGCAGAUGUGCUUGC-CGACGAUGCCACAGCGGCAGCUGGCGUGGGCAGAU ..((.(((....))).)).((((((((.((((.(((((((...))))))))))).))))))))(((-(.(((.((((.....)))).....))).))))... ( -41.00, z-score = -1.40, R) >droSim1.chr2L 10161614 101 + 22036055 CUUGGAGCGAUAGUUGUACGGCAUGUUGGCGUACUGCGAUUGCAUCGCGGAUGCAGAUGUGCUUGC-AGACGAUGCCACAGCGGCAGCUGGCGUCGGCAGAU ......((.....(((((.((((((((.((((.(((((((...))))))))))).)))))))))))-)).((((((((..((....)))))))))))).... ( -42.50, z-score = -1.42, R) >droAna3.scaffold_12916 14213544 91 + 16180835 UUUGGAGCGAAAGUUGUACGGCAUAUUGGCGUACUGGGACUGUGAUUGGGACUGAACCGAGGCGGC-GGAAGA---CCCGGAAGCGGCUGGUGUG------- ..((.(((....))).))...(((((..((((.(((((.((((..((((.......)))).))))(-....).---)))))..)).))..)))))------- ( -30.30, z-score = -1.73, R) >anoGam1.chr3L 31961383 95 - 41284009 AUUUGAGCAGCGAUCCACCUGCA--CCGGCUUGC----GCAGCGUUGAUGAUGUUGAUGCCCCCGCCGGACGCCAUCAGACCGGCCAUUAGGCUCGCACCG- .........((((.((.......--(((((..((----((((((((...))))))).)))....)))))..(((........))).....)).))))....- ( -30.90, z-score = -0.43, R) >consensus CUUGGAGCGAUAGUUGUACGGCAUAUUGGCGUACUGCGAUUGCAUCGCGGAUGCAGAUGUGCUUGC_AGACGAUGCCACAGCGGCAGCUGGCGUGGGCAGAU ......((..(((((((.(((((((((.((((.(((((((...))))))))))).)))))).)))..................)))))))..))........ (-12.63 = -14.01 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:58 2011