| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,929,765 – 5,929,860 |
| Length | 95 |
| Max. P | 0.702141 |
| Location | 5,929,765 – 5,929,860 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.14413 |
| G+C content | 0.28001 |
| Mean single sequence MFE | -12.28 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5929765 95 - 22422827 UAGGCUAAACUACAAUAUGUAUUGUUUUACAUAAUCCCCUGUAUUUAUUUGUGUAUUAAAGUUCAAUGUUUAUUUAAGCCAA-UCUUUUCUUACCG- ..((((.((.((.(((((..(((....(((((((..............)))))))....)))...))))))).)).))))..-.............- ( -12.34, z-score = -1.14, R) >droSim1.chrX 4657618 95 - 17042790 UAGGCUAAACCACAAUAUGUAUUGUAUUACAUAAUCCCCUAUAUUUAUUUGUGUAUUAAAGUUCAAUGUUUAUUUAAGCCAA-UCUUUUCUUUCCG- ..((((.......(((((..(((.((.(((((((..............))))))).)).)))...)))))......))))..-.............- ( -12.06, z-score = -1.54, R) >droSec1.super_4 5343371 95 + 6179234 UAGGCUAAACCACAAUAUGUAUUGUAUUACAUAAUCCCCUAUAUUUAUUUGUGUAUUAAAGUUCAAUGUUUAUUUAAGCCAA-UCUUUUCUUUCCG- ..((((.......(((((..(((.((.(((((((..............))))))).)).)))...)))))......))))..-.............- ( -12.06, z-score = -1.54, R) >droEre2.scaffold_4690 3265146 97 - 18748788 UAGGCUAAACCACAAUAUGUAUGGUAUUACAUAAUCCCUUGUAUUUAUUUAUGUAUUAAAGUUCAAUGUUAAUUCAAGCCAAGCCUCUUCCUUUUCU ..((((.......(((((..((..((.(((((((..............))))))).))..))...)))))......))))................. ( -12.66, z-score = -0.51, R) >consensus UAGGCUAAACCACAAUAUGUAUUGUAUUACAUAAUCCCCUAUAUUUAUUUGUGUAUUAAAGUUCAAUGUUUAUUUAAGCCAA_UCUUUUCUUUCCG_ ..((((.......(((((..(((....(((((((..............)))))))....)))...)))))......))))................. (-11.50 = -11.56 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:25 2011