| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,925,865 – 5,925,990 |
| Length | 125 |
| Max. P | 0.996049 |
| Location | 5,925,865 – 5,925,990 |
|---|---|
| Length | 125 |
| Sequences | 3 |
| Columns | 125 |
| Reading direction | forward |
| Mean pairwise identity | 91.73 |
| Shannon entropy | 0.11553 |
| G+C content | 0.28533 |
| Mean single sequence MFE | -27.57 |
| Consensus MFE | -21.35 |
| Energy contribution | -22.13 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5925865 125 + 22422827 UGAGAGAAAAAUAUGAGCACAUACAAUAAGCAAUUCAGAAGAAUAGCUUACCUUAAGAAGAGUAUACUGAACUUCAGUACAACUAUUGUACUUUAAGUUUGUAAAUAAACUAUGAACAUUUUCUC ...(((((((...........((((((((((.((((....)))).)))))..........(((.(((((.....)))))..))).)))))......(((..((.......))..))).))))))) ( -24.50, z-score = -2.10, R) >droSec1.super_4 5339383 125 - 6179234 UGAGAGAAAAGUAUGAGCAUAUACAAUCAGCUAUUCAAAAAAAUAGCUUCUCUAAAGAAGAGUAUACUCAACUUCAGUACAACUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGAACAUUUUCUC .(((((((((((.((((..(((((.....((((((......))))))((((....))))..))))))))))))).((((((.....))))))....(((..((.......))..))).))))))) ( -25.00, z-score = -1.64, R) >droSim1.chrX 4653640 125 + 17042790 UGAGAGAAAAAUAUGAGCACAUACAAUAAGCUAUUCAAAAGAAUAGCUUCCCUGAAGAGGAGUAUACUCAACUUCAAUACAAUUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGAACAUUUUCUC ...(((((((..........((((((((((((((((....))))))).....(((((..(((....)))..)))))......))))))))).....(((..((.......))..))).))))))) ( -33.20, z-score = -4.88, R) >consensus UGAGAGAAAAAUAUGAGCACAUACAAUAAGCUAUUCAAAAGAAUAGCUUCCCUAAAGAAGAGUAUACUCAACUUCAGUACAACUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGAACAUUUUCUC ...(((((((...........(((((((((((((((....))))))))........((((((....))...))))........)))))))......(((..((.......))..))).))))))) (-21.35 = -22.13 + 0.78)
| Location | 5,925,865 – 5,925,990 |
|---|---|
| Length | 125 |
| Sequences | 3 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 91.73 |
| Shannon entropy | 0.11553 |
| G+C content | 0.28533 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -27.62 |
| Energy contribution | -27.97 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.88 |
| SVM RNA-class probability | 0.996049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5925865 125 - 22422827 GAGAAAAUGUUCAUAGUUUAUUUACAAACUUAAAGUACAAUAGUUGUACUGAAGUUCAGUAUACUCUUCUUAAGGUAAGCUAUUCUUCUGAAUUGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCA (((((((.......(((((......)))))...((((((..(((.((((((.....))))))))).....((..((((((.((((....)))).))))))..)))))))).....)))))))... ( -29.90, z-score = -3.28, R) >droSec1.super_4 5339383 125 + 6179234 GAGAAAAUGUUCAUAGUUCAUUUACAAACUUAAAAUACAAUAGUUGUACUGAAGUUGAGUAUACUCUUCUUUAGAGAAGCUAUUUUUUUGAAUAGCUGAUUGUAUAUGCUCAUACUUUUCUCUCA (((((((.........((((..(((((.((...........))))))).))))((((((((((((((.....)))).((((((((....)))))))).......)))))))).)))))))))... ( -30.00, z-score = -2.58, R) >droSim1.chrX 4653640 125 - 17042790 GAGAAAAUGUUCAUAGUUCAUUUACAAACUUAAAAUACAAUAAUUGUAUUGAAGUUGAGUAUACUCCUCUUCAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCA (((((((...................(((((..((((((.....)))))).)))))(((((((.((((....))))(((((((((....)))))))))......)))))))....)))))))... ( -33.00, z-score = -4.25, R) >consensus GAGAAAAUGUUCAUAGUUCAUUUACAAACUUAAAAUACAAUAGUUGUACUGAAGUUGAGUAUACUCUUCUUAAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCA (((((((((..(((((((........))))....(((((((.......((((((..(((....)))..))))))..(((((((((....)))))))))))))))))))..)))...))))))... (-27.62 = -27.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:25 2011