| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,919,093 – 5,919,186 |
| Length | 93 |
| Max. P | 0.771381 |
| Location | 5,919,093 – 5,919,186 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Shannon entropy | 0.17452 |
| G+C content | 0.49176 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -19.77 |
| Energy contribution | -20.15 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5919093 93 + 22422827 CGGCUCCUCACUUUUCCCCGCGAUACGCAGAUCUUGAAAUCUUCGGGGUUGGAAGA-----GUCGUAAACAUUUAUUAGUUAUGGCUCAUUUCGGGGC ..(((((........(((((((...)))((((......))))..))))..((((((-----(((((((.(........)))))))))).))))))))) ( -29.10, z-score = -1.99, R) >droSim1.chrX 4647026 91 + 17042790 CAGCUCCUCACUUUUCCCC--GAUACGCAGAUCGUGGAAUCUUCGGGGUUGGAAGA-----GUCGUAAACAUUUAUUAGUUACGGCUCAUUUCGGGGC ..(((((........((((--((..(((.....)))......))))))..((((((-----(((((((.(........)))))))))).))))))))) ( -32.70, z-score = -3.44, R) >droSec1.super_4 5332849 92 - 6179234 CAGCUCCUCACUUUUCCCCC-GAUACGCAGAUCGUGAAAUCUUCGGGGUUGGAAGA-----GUCGUAAAAAUUUAUUAGUUACGGCUCAUUUCGGGGC ..(((((.........((((-((..(((.....)))......))))))..((((((-----(((((((..(.....)..))))))))).))))))))) ( -31.50, z-score = -3.00, R) >droEre2.scaffold_4690 3255063 96 + 18748788 CAGCUCCCCACUUGUCCCC--GAUCCGCAGCGCUGGAAAUCUUCGGGAAUGGAAGAAAAGAGUCGUAAACAUUUAUUAGUUACGGCUCAUUUCGGGGC .....((((..(..(.(((--(((((((...)).))).....))))).)..)..((((.(((((((((.(........)))))))))).)))))))). ( -32.60, z-score = -2.21, R) >consensus CAGCUCCUCACUUUUCCCC__GAUACGCAGAUCGUGAAAUCUUCGGGGUUGGAAGA_____GUCGUAAACAUUUAUUAGUUACGGCUCAUUUCGGGGC ..(((((...((..((((...(((.(((.....)))..)))...))))..))..((.....(((((((..(.....)..))))))).....))))))) (-19.77 = -20.15 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:23 2011