| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,916,764 – 5,916,857 |
| Length | 93 |
| Max. P | 0.969089 |
| Location | 5,916,764 – 5,916,857 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.56973 |
| G+C content | 0.43153 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -11.61 |
| Energy contribution | -12.42 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5916764 93 + 22422827 -------CUGCUUUUCCUACCUGUGCC-GUU--GGAUUGAUC-GCUUGAUCCAGCACGAUAAAAAGUAGUCGAAUAAAAAGCGGGUAUGCACAUAAAUACAUAC -------((((((((............-(((--((((..(..-..)..))))))).((((........))))....))))))))((((........)))).... ( -24.70, z-score = -2.40, R) >droSim1.chrX 4644764 85 + 17042790 -------CUGUUUUUCCUACCUGUGCC-AUU--GGAUUGAUC-GCUUGAUCCAGCACGAUAAAAAGUAGUCGAAUAAAAAGCGGGUAUGCCCAUAC-------- -------..((((((.......((((.-..(--((((..(..-..)..)))))))))(((........))).....))))))(((....)))....-------- ( -20.90, z-score = -1.66, R) >droSec1.super_4 5330589 84 - 6179234 -------AUG-UUUUCCUACCUGUGCC-AUU--GGAUUGAUC-GCUUGAUCCAGCACGAUAAAAAGUAGUCGAAUAAAAAGCGGGUAUGCCCAUAC-------- -------.((-(((..((((.(((((.-..(--((((..(..-..)..)))))))))).......))))..)))))......(((....)))....-------- ( -21.00, z-score = -1.78, R) >droYak2.chrX 14775174 97 + 21770863 GUUGUUGUUGCUUUUACUACCUGUGCU------GGAUUGAUC-GCUUGAUCCAGCACGAUAAAAAGUAGUCGAGUAAAAAGCGGGUACCUAUACCUAUUUAUAC .........(((((((((....(((((------((((..(..-..)..)))))))))(((........))).))).))))))(((((....)))))........ ( -30.30, z-score = -3.79, R) >droEre2.scaffold_4690 3253028 91 + 18748788 -------UUGCCUUUCCUACCUGUGCCUGUUUGGGAUUGAUC-GCUUGAUCCGGGACGAUAAAAAGUAGUCGAAUAAAAAGCGGGUAUGCACAUUACAG----- -------...............((((((((((..(.(((((.-.(((.(((......)))...)))..))))).)...))))))))))...........----- ( -21.00, z-score = -0.13, R) >droWil1.scaffold_180702 4334279 75 + 4511350 ----------GUACUACUACCUGUUCUACCU---GAUCGAUCUACUUGGAUCAGCAGCAGCGAUAGCACACAAGAAAAACGAGCCAAA---------------- ----------((.(((....(((((....((---((((.(......).)))))).)))))...))).))...................---------------- ( -12.90, z-score = -0.45, R) >consensus _______CUGCUUUUCCUACCUGUGCC_AUU__GGAUUGAUC_GCUUGAUCCAGCACGAUAAAAAGUAGUCGAAUAAAAAGCGGGUAUGCACAUAA________ .................(((((((.........(((((((.....)))))))....((((........))))........)))))))................. (-11.61 = -12.42 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:22 2011