| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,914,071 – 5,914,164 |
| Length | 93 |
| Max. P | 0.872091 |
| Location | 5,914,071 – 5,914,164 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.81 |
| Shannon entropy | 0.54328 |
| G+C content | 0.59883 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -16.72 |
| Energy contribution | -19.08 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.872091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5914071 93 - 22422827 UAACUGCGUCUUUGGUUCUGGCUGCAACUGCGAAUGCGGCGCCAGAGGUG-CUCCUCCUGGACUGGAGACCCUGCUGGAUUCGAUUGCGAUACU ....((((((((..((((.(((((((........))))))....((((..-..))))).))))..)))))((....))........)))..... ( -31.10, z-score = -1.04, R) >dp4.chrXL_group1e 7056472 70 + 12523060 ---CCGCGACUGCGACUGAAACCGCGAUAGCGACUAAAACAGCGACGGCGACUUCGACUUCGAUGCCGGCGCC--------------------- ---.(((...((((........))))...))).........(((.(((((...(((....)))))))).))).--------------------- ( -22.70, z-score = -1.84, R) >droEre2.scaffold_4690 3250414 93 - 18748788 UAACUGCGACUUCGAUGCUGGCUGCAACUGCGAAUGCGGCGCCAGCGGUG-CUCCUCCUGGACUGGGCACUCUGCUGGAUUCGAUUGCGUUGCU .....(((((.((((.....((((((........)))))).(((((((((-(.((.........)))))))..)))))..))))....))))). ( -35.00, z-score = -1.54, R) >droSec1.super_4 5327938 93 + 6179234 UAACUGCGUCUUUGGUUCUGGCUGCAACUGCAAAUGCGGCGCCAGCGGUG-CUCCUCCUGGACUGGGGACCCUGCUGGAUUCGAUUGCGGUACU ..((((((...((((.....((((((........)))))).(((((((.(-.(((.((......))))).))))))))..)))).))))))... ( -36.20, z-score = -1.71, R) >droSim1.chrX 4642075 93 - 17042790 UAACUGCGUCUUUGGCUCUGGCUGCAACUGCGAAUGCGGCGCCAGCGGUG-CUCCUCCUGGACUGGGGACCCUGCUGGAUUCGAUUGCGAUACU ......(((..((((.....((((((........)))))).(((((((.(-.(((.((......))))).))))))))..))))..)))..... ( -32.60, z-score = -0.90, R) >consensus UAACUGCGUCUUUGGUUCUGGCUGCAACUGCGAAUGCGGCGCCAGCGGUG_CUCCUCCUGGACUGGGGACCCUGCUGGAUUCGAUUGCGAUACU ....((((.((........)).))))...((((...(((..(((((((.(.((((.........)))).).)))))))..))).))))...... (-16.72 = -19.08 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:21 2011