| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,899,221 – 5,899,274 |
| Length | 53 |
| Max. P | 0.962971 |
| Location | 5,899,221 – 5,899,274 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 76.04 |
| Shannon entropy | 0.43067 |
| G+C content | 0.42649 |
| Mean single sequence MFE | -11.18 |
| Consensus MFE | -8.85 |
| Energy contribution | -8.69 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5899221 53 + 22422827 CUAUCACCUGUAAGUGCAAGACGCGAAGCUCAGGUGAAAUUUAUCAGCCACAA ...(((((((....(((.....))).....)))))))................ ( -13.70, z-score = -2.13, R) >droAna3.scaffold_12929 202450 50 + 3277472 ---UCACCUGUAACUGCAAACUACAUGUUUUAGGUGAAAUUUAUCAACCUCUA ---(((((((.(((((.......)).))).)))))))................ ( -10.40, z-score = -2.86, R) >droPer1.super_21 1245909 53 - 1645244 CUAUCACCUGUAAAUGUAAGACCCUUUGUUCAGGUGAAAUUGAACAGCAGCCA ...(((((((....................)))))))................ ( -9.05, z-score = -0.47, R) >dp4.chrXL_group1e 7040379 53 - 12523060 CUAUCACCUGUAAAUGUAAGACCCUUUGUUCAGGUGAAAUUGAACAGCAGCCG ...(((((((....................)))))))................ ( -9.05, z-score = -0.79, R) >droEre2.scaffold_4690 3236315 53 + 18748788 CCAUCACCUGUAAGUGCAAGACGCGAGGCUCAGGUGAAAUUUAUCAGCCACAA ...(((((((....(((.....))).....)))))))................ ( -13.70, z-score = -1.65, R) >consensus CUAUCACCUGUAAAUGCAAGACCCGUGGUUCAGGUGAAAUUUAUCAGCCACAA ...(((((((....................)))))))................ ( -8.85 = -8.69 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:19 2011