| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,883,690 – 5,883,787 |
| Length | 97 |
| Max. P | 0.871008 |
| Location | 5,883,690 – 5,883,787 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.68 |
| Shannon entropy | 0.32533 |
| G+C content | 0.44866 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -19.80 |
| Energy contribution | -20.84 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5883690 97 + 22422827 -----CCCAGUUAGGGGC-----AACCUUAAGUGGUUUCUUUU-----------GCUGAGUGUGCUGAGCAAACAGUUUUCGGAUCUUUA-GUGCUUCGAAAU-CCAAAGAUGCUGAGUG -----.(((.((((((..-----..)))))).))).....(((-----------(((.((....)).))))))(((((((((((.(....-..).))))))).-........)))).... ( -30.30, z-score = -1.86, R) >droSim1.chrX 4612520 97 + 17042790 -----CCCAGUUAGGGGC-----AACCUUAAGUGGUUUCUUUU-----------GCUGUGUGUGCUGAACAAACAGUUUUCGGAUCUUUA-GUGGUUCGAAAU-CCAAAGAUGCUGAGUG -----.(((.((((((..-----..)))))).)))..(((((.-----------(((((.(((.....))).)))))(((((((((....-..))))))))).-..)))))......... ( -32.40, z-score = -3.00, R) >droSec1.super_4 5297853 97 - 6179234 -----CCCAGUUAGGGGC-----AACCUUAAGUGGUUUCUUUU-----------GCUGUGUGUGCUGAACAAACAGUUUUCGGAUCUUUA-GUGGUUUGAAAU-CCAAAGAUGCUGAGUG -----.(((.((((((..-----..)))))).)))..(((((.-----------(((((.(((.....))).)))))(((((((((....-..))))))))).-..)))))......... ( -30.40, z-score = -2.40, R) >droYak2.chrX 14737171 103 + 21770863 -----CCCAGUUAGGG-C-----CACCUUAAGUGGUUUUUUUUUCGCUGUUUGUGUUGUGUGUGCUGCACAAACAGUAUUCGGAUCUUUAAGUGGUUCGAAAAACCAAAGAUGC------ -----.(((.((((((-.-----..)))))).)))..........(((((((((((.((....)).))))))))))).((((((((.......)))))))).............------ ( -33.90, z-score = -3.36, R) >droEre2.scaffold_4690 3221166 109 + 18748788 GGUCACCAAAUCGGGGUUUCCUACGCCUUAAGUGGUUUCUCUA---------GCCGUGUGUGUGCCGCACAAACAGUUUUCGGAUCUUUA-GUGCUUCGAAAU-CCAAAGAUGCUGAGUG ...(((((.(((.(((((((....((.(((((.(((((....(---------((.((.((((.....)))).)).)))...)))))))))-).))...)))))-))...)))..)).))) ( -26.10, z-score = 0.27, R) >consensus _____CCCAGUUAGGGGC_____AACCUUAAGUGGUUUCUUUU___________GCUGUGUGUGCUGAACAAACAGUUUUCGGAUCUUUA_GUGGUUCGAAAU_CCAAAGAUGCUGAGUG ......(((.((((((.........)))))).)))..(((((............(((((.(((.....))).)))))(((((((((.......)))))))))....)))))......... (-19.80 = -20.84 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:18 2011