Locus 13330

Sequence ID dm3.chrX
Location 5,875,243 – 5,875,304
Length 61
Max. P 0.940136
window18350

overview

Window 0

Location 5,875,243 – 5,875,304
Length 61
Sequences 6
Columns 63
Reading direction forward
Mean pairwise identity 92.43
Shannon entropy 0.14445
G+C content 0.37505
Mean single sequence MFE -12.08
Consensus MFE -10.65
Energy contribution -11.32
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.44
SVM RNA-class probability 0.940136
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 5875243 61 + 22422827
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUAUUGUACUCUUGACU--AAUCUGC
....(((......(((.(((((.((((........)))).))))).))).))).--....... ( -10.10, z-score =  -1.15, R)
>droSim1.chrX 4603936 61 + 17042790
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUUUUGUACUCUUGACU--AAUCUGC
....(((......(((.((((((((((........)))))))))).))).))).--....... ( -13.30, z-score =  -2.57, R)
>droSec1.super_4 5289366 61 - 6179234
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUUUUGUACUCUUGACU--AAUCUGC
....(((......(((.((((((((((........)))))))))).))).))).--....... ( -13.30, z-score =  -2.57, R)
>droYak2.chrX 14728375 61 + 21770863
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUUUUGUACUCUUGACU--AAUCUGC
....(((......(((.((((((((((........)))))))))).))).))).--....... ( -13.30, z-score =  -2.57, R)
>droEre2.scaffold_4690 3212767 61 + 18748788
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUUUUGUACACUUGACU--AAUCUGC
.....((((...)))).((((((((((........)))))))))).........--....... ( -10.80, z-score =  -1.42, R)
>droAna3.scaffold_12929 177390 63 + 3277472
UUCUGUCUGAAUCAGAAUAUAAAGUCCAAACCUUUGGAUUUUGCACUCUCGUCUCUAAUCUAC
(((((.......)))))..((((((((((....)))))))))).................... ( -11.70, z-score =  -2.53, R)
>consensus
UUUCGUCUGAAUCAGAAUAUAAAGUCCACCCAUUCGGAUUUUGUACUCUUGACU__AAUCUGC
...........(((((.((((((((((........)))))))))).))).))........... (-10.65 = -11.32 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:17 2011