| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,364,484 – 10,364,596 |
| Length | 112 |
| Max. P | 0.750550 |
| Location | 10,364,484 – 10,364,596 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.41 |
| Shannon entropy | 0.26645 |
| G+C content | 0.35476 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -17.18 |
| Energy contribution | -15.61 |
| Covariance contribution | -1.58 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10364484 112 - 23011544 UCUUUUGCAUUUACAUUUCGUUUUAUACACUCA-------UAUUGUUAAUUUUCACUUUUAUUUUAUCCAGGAGAACGGACCA-CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((.........-------.........(((((.((............)))))))..((((.-....))))......)))))))))........)))). ( -16.84, z-score = -0.82, R) >droSim1.chr2L 10154109 112 - 22036055 UCUAUUGCAUUUACAUUUCGUUUUAUACACUCA-------UAUUGUUAAUUUUCACUUUUAUUUCAUCCAGGAGAACGGACCA-CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((.....(((.-------...((.(((.........)))...)).....)))....((((.-....))))......)))))))))........)))). ( -17.64, z-score = -1.04, R) >droSec1.super_3 5789639 112 - 7220098 UCUAUUGCAUUUACAUUUCGUUUUAUACACUCA-------UAUUGUUAAUUUUCACUUUUAUUUCAUCCAGGAGAACGGACCA-CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((.....(((.-------...((.(((.........)))...)).....)))....((((.-....))))......)))))))))........)))). ( -17.64, z-score = -1.04, R) >droYak2.chr2L 13044319 112 - 22324452 UCUAUUGCAUUUACAUUUUGUUUUAUACAUUCA-------UAUUGUUAAUUUUCACUUUUAUUGUAUCUAGGAGAACGGACCA-CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((.........-------...............((((((.......))))))....((((.-....))))......)))))))))........)))). ( -16.04, z-score = 0.17, R) >droEre2.scaffold_4929 10973059 112 - 26641161 UCUAUUGCAUUUACAUUUUGUUUUAUACAUUCA-------UAUUGUUAAUUUUCACUUUUAUUUUAUUCAGGAGAACGGACCA-CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((.........-------.........(((((.((............)))))))..((((.-....))))......)))))))))........)))). ( -14.74, z-score = -0.06, R) >droAna3.scaffold_12916 14204774 120 - 16180835 GGAUAUGCAUUUGUAUUUUAACUCAAGAACUCAUCUAUCUUACAAUAAAUUUUUAAUGCUAUUUUAUUCAGCUGAAACGAUCAGCUAAGAUCACCGACGAGUUAAGAAACCUUUCUGCAG .....((((...((.(((((((((.(((.....)))(((((..((((((.............)))))).((((((.....))))))))))).......))))))))).)).....)))). ( -22.22, z-score = -1.85, R) >consensus UCUAUUGCAUUUACAUUUCGUUUUAUACACUCA_______UAUUGUUAAUUUUCACUUUUAUUUUAUCCAGGAGAACGGACCA_CUAAGGUCACCAGCGAGACGAGAAACCUUUCUGCAG .....((((......(((((((((...............................(((((.........)))))....((((......))))......)))))))))........)))). (-17.18 = -15.61 + -1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:57 2011