| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,868,250 – 5,868,303 |
| Length | 53 |
| Max. P | 0.920324 |
| Location | 5,868,250 – 5,868,303 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 64.27 |
| Shannon entropy | 0.63407 |
| G+C content | 0.35684 |
| Mean single sequence MFE | -7.62 |
| Consensus MFE | -6.39 |
| Energy contribution | -4.97 |
| Covariance contribution | -1.41 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.43 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 5868250 53 + 22422827 AUUUUGCUGCACAAAUUAUUAUACAUUUAUUAUGGUGGCUCAGUCGGCAAAUG ..(((((((.((...((((((((.......))))))))....))))))))).. ( -9.60, z-score = -1.01, R) >droSim1.chrX 4596009 53 + 17042790 AUUUUGCUUCACAAAUUAUUAUACAUUUAUUAUGGUGGCUCAGUCGGCAAAUG ..((((((.......((((((((.......)))))))).......)))))).. ( -6.54, z-score = -0.49, R) >droSec1.super_4 5282570 53 - 6179234 AUUUUGCUUCACAAAUUCUUAUACAUUUAUUAUGGGGGCUUAGUCGGCAAAUG ..((((((..((((.((((((((.......)))))))).)).)).)))))).. ( -8.30, z-score = -1.74, R) >droEre2.scaffold_4690 3206260 51 + 18748788 --UUUGCUUCAUCAAUUAUUAUGUAUUUAUUAAUGUGGCUCAGUCGGCAACUG --...(((.(((.(((............))).))).))).((((.....)))) ( -4.30, z-score = 0.71, R) >dp4.chrXL_group1e 7004895 52 - 12523060 -GUUUGCUUUGCAGCCCUGAUGGCGAUUACUCAUUUGGUUUUUAUGUUGAAUG -..(((((...((....))..))))).....(((((..(......)..))))) ( -7.10, z-score = 0.44, R) >droPer1.super_21 1208886 52 - 1645244 -GUUUGCUUUGUAGCCCUGAUGGCAAUUACUCAUUUGGUUUUUAUGCGGAAUG -.(((((.....((((..(((((.......))))).)))).....)))))... ( -9.90, z-score = -0.51, R) >consensus _UUUUGCUUCACAAAUUAUUAUACAUUUAUUAAGGUGGCUCAGUCGGCAAAUG ..((((((.......((((((((.......)))))))).......)))))).. ( -6.39 = -4.97 + -1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:15 2011