Locus 13324

Sequence ID dm3.chrX
Location 5,828,105 – 5,828,208
Length 103
Max. P 0.500000
window18340

overview

Window 0

Location 5,828,105 – 5,828,208
Length 103
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 78.89
Shannon entropy 0.27780
G+C content 0.46281
Mean single sequence MFE -35.33
Consensus MFE -25.43
Energy contribution -26.43
Covariance contribution 1.01
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chrX 5828105 103 + 22422827
---------------GUCGCUGAGGUGAGGUCAGUGUGGCAAGCAGUUUAAUUGCUACAAGGACGCAAAGCAGUGCAAACAGCUUAAGCUUGCCUCU-UUGUGAUUAACAAUCUGUUUC
---------------(((((.((((..(((((..((((((((.........))))))))..)))...((((.((....)).))))...))..)))).-..))))).............. ( -35.50, z-score =  -2.08, R)
>droEre2.scaffold_4690 3170182 119 + 18748788
UUUUUUCUUUUUUUUUCUGCCAAGGUGAGGUCAGUGUGGCAAGCAGUUGAAUUGCCACAAGGACGUAAAGCAGUGCAAGCAGAUUAAACUGGGCGGUCUUGUGAUUAACAAUCGGCUUC
......((..(((..(((((((..((.(.(((..((((((((.........))))))))..))).)...))..))...)))))..)))..))((.(..((((.....)))).).))... ( -33.70, z-score =  -0.85, R)
>droSec1.super_4 5242722 103 - 6179234
---------------GUCGCCGCGGUGAGGUCAGUGUGGCAAGCAGUUUAAUUGCUACAAGGACGCAAAGCUGUGCAAGCAGCUUAAGCUUGCCUCU-UUGUGAUUAACAAUCGGUUUG
---------------...((((.((..(((((..((((((((.........))))))))..)))...(((((((....)))))))...))..))...-((((.....)))).))))... ( -36.80, z-score =  -1.63, R)
>consensus
_______________GUCGCCGAGGUGAGGUCAGUGUGGCAAGCAGUUUAAUUGCUACAAGGACGCAAAGCAGUGCAAGCAGCUUAAGCUUGCCUCU_UUGUGAUUAACAAUCGGUUUC
..................((((((((((((((..((((((((.........))))))))..)))(((......)))............))))))....((((.....)))))))))... (-25.43 = -26.43 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:09 2011