| Sequence ID | dm3.chrX |
|---|---|
| Location | 5,815,266 – 5,815,342 |
| Length | 76 |
| Max. P | 0.973421 |
| Location | 5,815,266 – 5,815,342 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 64.18 |
| Shannon entropy | 0.62989 |
| G+C content | 0.31738 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -6.22 |
| Energy contribution | -6.98 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973421 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 5815266 76 - 22422827 GAAAAAAUUACACAUAUGCAUUUAUUUCAGUAUGUGCGAAAGCAUAUGCAUAUGCA-----UAUGGACAUGCAUUUUCUGC (((((.......(((((((((........((((((((....))))))))..)))))-----))))........)))))... ( -24.16, z-score = -3.30, R) >droWil1.scaffold_180764 676140 81 + 3949147 GCAAAAUUUACAAAUUCAUAUGUAUGUGCGUUUGUGUGUGUGCAUAUGCAUAUCCAUUUAGUUUGGAGUUGGAUUUAUUAA ...........(((((((((((((((((((..(....)..))))))))))))((((.......))))..)))))))..... ( -20.40, z-score = -1.74, R) >droPer1.super_21 473965 74 - 1645244 CCAAACAUCACCUGGCAGAGUGUAUUUAUUUUU-UGCAAAAAUAUGUUUAUAUCU------UUGCACGAUGCCAUUACUUU ............(((((..(((((.........-.(((......)))........------.)))))..)))))....... ( -14.91, z-score = -2.19, R) >droSim1.chrX_random 1873801 72 - 5698898 GAAAAAAUUACACUU----AUUUAUUGCAGUAUAUGCGAAAACAUGUGCAUAUGCA-----UAUGGACAUGCAUUUUCUGC ...............----.......((((...(((((....(((((((....)))-----))))....)))))...)))) ( -19.70, z-score = -2.76, R) >droSec1.super_4 5235173 72 + 6179234 GAAAAAAUUACACUU----AUUUAUUUUAGUAUAUGCGAAAGCAUGUGCAUAUGCA-----UAUGGACAUGCAUUUUCUGC (((((..........----..........((((((((....))))))))...((((-----(......))))))))))... ( -20.30, z-score = -3.14, R) >consensus GAAAAAAUUACACAU____AUUUAUUUCAGUAUAUGCGAAAGCAUGUGCAUAUGCA_____UAUGGACAUGCAUUUUCUGC .............................((((((((....))))))))................................ ( -6.22 = -6.98 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:19:09 2011